JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCLRE1C_chr10_14899613_14959096	0/0	t0077	3881	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0078	3881	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0079	3881	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0080	3881	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0081	3881	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0082	3881	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0083	3881	1	0	0	0	0	1	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0084	3881	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0085	3881	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0086	3881	1	1	0	0	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0087	3880	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCLRE1C_chr10_14899613_14959096	0/0	t0088	3895	1	0	0	1	0	0	copy fasta	DCLRE1C	chr10	14899613	14959096
DCN_chr12_91135484_91187817	1/1	t0001	5771	131	27	25	63	3	11	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0002	5771	22	7	4	9	0	2	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0003	5771	12	12	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0004	5771	10	9	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0005	5772	9	8	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0006	5771	8	0	1	7	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0007	5771	4	4	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0008	5771	3	3	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0009	5771	3	1	0	0	0	2	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0010	5771	3	0	2	1	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0011	5771	3	3	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0012	5771	2	0	0	2	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0013	5771	2	0	0	2	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0014	5771	2	0	2	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0015	5771	2	2	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0016	5773	2	0	1	0	0	1	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0017	5771	2	2	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0018	5771	2	2	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0019	5771	2	0	2	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0020	5771	1	1	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0021	5771	1	0	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0022	5771	1	0	0	0	0	1	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0023	5771	1	0	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0024	5771	1	1	0	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0025	5771	1	0	1	0	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0026	5771	1	0	0	1	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0027	5771	1	0	0	1	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0028	5771	1	0	0	1	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0029	5771	1	0	0	0	1	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0030	5771	1	0	0	1	0	0	copy fasta	DCN	chr12	91135484	91187817
DCN_chr12_91135484_91187817	0/0	t0031	5771	1	0	0	0	0	1	copy fasta	DCN	chr12	91135484	91187817
DCP1A_chr3_53278429_53352543	1/0	t0001	4178	60	3	13	32	4	7	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/1	t0002	4174	45	7	8	25	3	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0003	4174	25	2	6	11	2	4	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0004	4175	20	0	9	5	3	3	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0005	4179	19	0	0	15	0	4	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0006	4175	19	1	6	11	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0007	4176	18	10	2	6	0	0	copy fasta	DCP1A	chr3	53278429	53352543