JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCP1A_chr3_53278429_53352543	0/0	t0008	4165	14	13	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0009	4175	12	2	1	7	1	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0010	4177	10	2	1	7	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0011	4175	9	0	2	4	1	2	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0012	4177	8	0	2	6	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0013	4165	8	0	3	5	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0014	4165	7	0	0	0	0	7	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0015	4179	6	1	1	1	0	3	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0016	4174	5	5	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0017	4176	5	0	2	3	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0018	4174	5	0	0	3	0	2	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0019	4173	5	4	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0020	4177	4	3	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0021	4176	4	4	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0022	4180	3	1	2	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0023	4176	3	1	0	1	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0024	4175	3	3	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0025	4163	3	0	0	3	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0026	4175	3	2	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0027	4179	3	3	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0028	4164	2	0	0	2	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0029	4166	2	0	0	2	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0030	4175	2	2	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0031	4177	2	2	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0032	4174	2	0	0	2	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0033	4176	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0034	4180	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0035	4179	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0036	4179	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0037	4166	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0038	4177	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0039	4178	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0040	4178	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0041	4178	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0042	4176	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0043	4178	1	0	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0044	4178	1	0	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0045	4168	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0046	4166	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0047	4168	1	0	0	0	0	1	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0048	4176	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0049	4175	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0050	4174	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0051	4174	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0052	4178	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0053	4174	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0054	4174	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0055	4173	1	0	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0056	4175	1	0	0	1	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0057	4173	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543