JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCP1A_chr3_53278429_53352543	0/0	t0058	4172	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0059	4176	1	0	1	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0060	4175	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0061	4179	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1A_chr3_53278429_53352543	0/0	t0062	4178	1	1	0	0	0	0	copy fasta	DCP1A	chr3	53278429	53352543
DCP1B_chr12_1941053_2009457	0/0	t0001	180	219	45	38	110	8	18	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	1/1	t0002	180	144	37	24	55	8	18	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	t0003	181	9	9	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	t0004	180	3	3	0	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	t0005	180	2	0	2	0	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP1B_chr12_1941053_2009457	0/0	t0006	180	1	0	0	1	0	0	copy fasta	DCP1B	chr12	1941053	2009457
DCP2_chr5_112971798_113027195	0/1	t0001	8846	77	3	19	40	3	11	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0002	8848	39	6	15	13	2	3	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0003	8847	24	5	1	11	2	5	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0004	8847	13	0	3	10	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0005	8846	12	12	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0006	8847	11	1	0	9	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0007	8846	10	1	0	9	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0008	8850	9	0	2	7	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0009	8849	5	0	0	5	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0010	8846	5	0	0	5	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0011	8848	5	5	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0012	8851	5	4	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0013	8847	5	4	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0014	8848	4	0	0	4	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0015	8847	4	4	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0016	8847	4	0	0	2	2	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0017	8847	4	4	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0018	8851	4	4	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0019	8842	3	2	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0020	8850	3	0	0	3	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0021	8846	3	0	2	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0022	8845	3	3	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0023	8846	3	3	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0024	8848	3	3	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0025	8848	2	1	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0026	8848	2	0	0	2	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0027	8849	2	0	0	2	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0028	8849	2	0	0	2	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0029	8846	2	2	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0030	8847	2	2	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0031	8848	2	0	0	2	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0032	8847	2	0	0	0	0	2	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0033	8847	2	0	0	2	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0034	8848	2	0	0	0	0	2	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0035	8846	2	0	0	2	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0036	8846	2	0	2	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0037	8846	2	0	0	0	2	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0038	8847	2	2	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	1/0	t0039	8848	2	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195