JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCP2_chr5_112971798_113027195	0/0	t0040	8846	2	0	2	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0041	8848	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0042	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0043	8848	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0044	8849	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0045	8846	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0046	8848	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0047	8849	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0048	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0049	8848	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0050	8848	1	0	0	0	1	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0051	8849	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0052	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0053	8849	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0054	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0055	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0056	8849	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0057	8849	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0058	8850	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0059	8850	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0060	8843	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0061	8851	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0062	8843	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0063	8848	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0064	8848	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0065	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0066	8845	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0067	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0068	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0069	8849	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0070	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0071	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0072	8847	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0073	8847	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0074	8847	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0075	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0076	8849	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0077	8849	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0078	8848	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0079	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0080	8846	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0081	8845	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0082	8846	1	0	0	0	1	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0083	8846	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0084	8846	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0085	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0086	8846	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0087	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0088	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0089	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195