JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCP2_chr5_112971798_113027195	0/0	t0090	8846	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0091	8846	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0092	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0093	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0094	8846	1	0	0	0	1	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0095	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0096	8846	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0097	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0098	8846	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0099	8847	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0100	8846	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0101	8846	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0102	8848	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0103	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0104	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0105	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0106	8848	1	0	0	1	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0107	8849	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0108	8851	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0109	8850	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0110	8847	1	0	1	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0111	8847	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0112	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0113	8848	1	1	0	0	0	0	copy fasta	DCP2	chr5	112971798	113027195
DCP2_chr5_112971798_113027195	0/0	t0114	8848	1	0	0	0	0	1	copy fasta	DCP2	chr5	112971798	113027195
DCPS_chr11_126299060_126355005	0/0	t0001	4412	44	3	19	7	4	11	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	1/0	t0002	4414	35	2	6	22	2	2	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0003	4414	33	11	8	4	0	10	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0004	4414	30	0	3	27	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0005	4413	25	1	3	19	0	2	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0006	4415	13	0	0	12	0	1	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0007	4413	10	0	0	10	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0008	4414	10	2	3	2	2	1	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0009	4413	9	0	5	2	0	2	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0010	4412	9	0	5	1	0	3	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0011	4413	8	6	0	0	0	2	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0012	4414	7	7	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0013	4414	6	6	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0014	4412	6	5	1	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0015	4414	5	0	1	4	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0016	4412	4	0	0	4	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0017	4415	4	0	3	0	1	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0018	4414	4	3	1	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0019	4412	3	2	0	0	1	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0020	4414	3	0	0	3	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0021	4413	2	2	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0022	4413	2	0	0	0	2	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0023	4412	2	2	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0024	4412	2	0	1	0	0	1	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0025	4413	2	0	2	0	0	0	copy fasta	DCPS	chr11	126299060	126355005