JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCPS_chr11_126299060_126355005	0/0	t0076	4412	1	0	0	1	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0077	4413	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0078	4414	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0079	4414	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0080	4413	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0081	4412	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0082	4411	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0083	4413	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCPS_chr11_126299060_126355005	0/0	t0084	4412	1	1	0	0	0	0	copy fasta	DCPS	chr11	126299060	126355005
DCST1_chr1_155028824_155055930	1/0	t0001	159	272	86	57	70	16	42	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/1	t0002	159	33	12	8	6	2	4	copy fasta	DCST1	chr1	155028824	155055930
DCST1_chr1_155028824_155055930	0/0	t0003	159	1	0	1	0	0	0	copy fasta	DCST1	chr1	155028824	155055930
DCST2_chr1_155013527_155038781	1/1	t0001	98	342	88	68	126	14	44	copy fasta	DCST2	chr1	155013527	155038781
DCSTAMP_chr8_104334826_104361689	1/1	t0001	541	378	85	56	182	12	41	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	t0002	541	48	9	18	15	1	5	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	t0003	541	4	4	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	t0004	541	2	2	0	0	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	t0005	541	1	0	0	1	0	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCSTAMP_chr8_104334826_104361689	0/0	t0006	541	1	0	0	0	1	0	copy fasta	DCSTAMP	chr8	104334826	104361689
DCTD_chr4_182885091_182922386	0/1	t0001	1392	163	14	34	88	7	19	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0002	1392	109	43	20	38	2	6	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0003	1392	45	2	5	27	2	9	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	1/0	t0004	1392	20	16	3	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0005	1392	13	10	3	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0006	1392	6	0	0	5	0	1	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0007	1392	5	5	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0008	1392	2	2	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0009	1392	2	2	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0010	1392	1	0	0	1	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0011	1392	1	0	1	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0012	1392	1	1	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0013	1392	1	0	0	1	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0014	1392	1	1	0	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0015	1392	1	0	0	1	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0016	1392	1	0	1	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0017	1392	1	0	1	0	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0018	1392	1	0	0	0	0	1	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0019	1392	1	0	0	1	0	0	copy fasta	DCTD	chr4	182885091	182922386
DCTD_chr4_182885091_182922386	0/0	t0020	1392	1	0	0	0	1	0	copy fasta	DCTD	chr4	182885091	182922386
DCTN1_chr2_74356155_74385311	1/1	t0001	619	378	94	62	182	10	28	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	t0002	619	2	0	2	0	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	t0003	619	1	0	0	1	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN1_chr2_74356155_74385311	0/0	t0004	619	1	0	0	1	0	0	copy fasta	DCTN1	chr2	74356155	74385311
DCTN2_chr12_57525051_57552192	1/1	t0001	768	254	55	44	116	7	30	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	t0002	768	83	21	11	44	1	6	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	t0003	768	7	7	0	0	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	t0004	768	6	4	1	1	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	t0005	768	1	1	0	0	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN2_chr12_57525051_57552192	0/0	t0006	768	1	0	0	1	0	0	copy fasta	DCTN2	chr12	57525051	57552192
DCTN3_chr9_34608546_34625495	1/1	t0001	268	423	91	82	190	16	42	copy fasta	DCTN3	chr9	34608546	34625495