JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCTN3_chr9_34608546_34625495	0/0	t0002	268	4	4	0	0	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN3_chr9_34608546_34625495	0/0	t0003	268	1	1	0	0	0	0	copy fasta	DCTN3	chr9	34608546	34625495
DCTN4_chr5_150703440_150764017	1/0	t0001	2734	152	35	31	62	0	23	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0002	2734	31	1	6	21	0	3	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0003	2733	20	18	2	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0004	2733	17	0	0	17	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0005	2734	17	16	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0006	2734	7	7	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0007	2734	6	0	1	0	0	5	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0008	2734	4	4	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0009	2732	4	4	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0010	2734	3	2	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0011	2734	3	3	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0012	2734	3	0	0	3	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0013	2734	2	0	0	2	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0014	2734	2	2	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/1	t0015	2734	2	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0016	2734	2	0	0	2	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0017	2734	1	1	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0018	2734	1	1	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0019	2734	1	0	0	0	0	1	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0020	2734	1	0	0	1	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0021	2734	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0022	2734	1	0	0	1	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0023	2734	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0024	2734	1	1	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0025	2734	1	0	0	1	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0026	2734	1	1	0	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN4_chr5_150703440_150764017	0/0	t0027	2734	1	0	1	0	0	0	copy fasta	DCTN4	chr5	150703440	150764017
DCTN5_chr16_23636466_23682472	0/1	t0001	10405	91	15	18	44	3	10	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0002	10402	41	1	6	29	3	2	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0003	10402	30	6	3	14	1	6	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0004	10405	11	10	1	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0005	10405	9	1	4	1	1	2	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	1/0	t0006	10406	9	2	0	6	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0007	10406	6	0	6	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0008	10407	6	6	0	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0009	10405	4	4	0	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0010	10403	4	1	3	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0011	10406	4	0	2	2	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0012	10405	4	3	1	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0013	10403	4	0	0	4	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0014	10405	4	4	0	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0015	10405	3	0	0	3	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0016	10405	3	0	0	0	3	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0017	10405	3	0	3	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0018	10403	3	0	0	3	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0019	10402	3	0	0	3	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0020	10402	3	0	0	3	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0021	10406	2	2	0	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472