JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCTN5_chr16_23636466_23682472	0/0	t0072	10403	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0073	10402	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0074	10403	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0075	10402	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0076	10405	1	0	1	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0077	10405	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0078	10405	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0079	10402	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0080	10405	1	0	1	0	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN5_chr16_23636466_23682472	0/0	t0081	10405	1	0	0	1	0	0	copy fasta	DCTN5	chr16	23636466	23682472
DCTN6_chr8_30151369_30188639	1/1	t0001	482	344	85	55	155	10	37	copy fasta	DCTN6	chr8	30151369	30188639
DCTN6_chr8_30151369_30188639	0/0	t0002	482	47	7	7	32	0	1	copy fasta	DCTN6	chr8	30151369	30188639
DCTN6_chr8_30151369_30188639	0/0	t0003	482	1	0	0	1	0	0	copy fasta	DCTN6	chr8	30151369	30188639
DCTPP1_chr16_30418615_30435030	1/1	t0001	669	359	86	78	133	14	46	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	t0002	669	5	0	0	5	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	t0003	669	4	0	0	4	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	t0004	669	1	0	0	1	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCTPP1_chr16_30418615_30435030	0/0	t0005	669	1	0	0	1	0	0	copy fasta	DCTPP1	chr16	30418615	30435030
DCT_chr13_94431811_94484682	0/0	t0001	3514	95	2	19	63	2	9	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/1	t0002	3513	66	12	17	15	5	16	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0003	3512	46	2	6	29	2	7	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0004	3513	24	8	6	1	5	4	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0005	3514	21	14	4	0	1	2	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0006	3513	19	16	1	1	0	1	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0007	3510	12	10	2	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0008	3512	9	8	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0009	3512	5	5	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0010	3509	4	0	3	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0011	3513	3	3	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0012	3513	2	0	0	2	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0013	3513	2	0	0	2	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0014	3512	2	0	0	0	0	2	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0015	3513	2	2	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0016	3513	2	1	1	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0017	3514	2	2	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0018	3512	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0019	3512	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0020	3512	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0021	3512	1	0	0	0	1	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0022	3512	1	0	0	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0023	3512	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	1/0	t0024	3515	1	0	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0025	3513	1	0	0	0	0	1	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0026	3513	1	0	0	0	1	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0027	3513	1	0	0	0	1	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0028	3513	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0029	3513	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0030	3513	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0031	3513	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0032	3581	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682