JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCT_chr13_94431811_94484682	0/0	t0033	3514	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0034	3512	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0035	3513	1	1	0	0	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0036	3513	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCT_chr13_94431811_94484682	0/0	t0037	3512	1	0	0	1	0	0	copy fasta	DCT	chr13	94431811	94484682
DCUN1D1_chr3_182933074_182985538	1/0	t0001	7070	81	19	13	39	2	7	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/1	t0002	7065	54	4	15	18	7	9	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0003	7070	23	0	0	20	0	3	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0004	7067	22	20	2	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0005	7070	22	3	2	13	2	2	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0006	7070	17	5	7	0	2	3	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0007	7066	15	0	0	13	0	2	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0008	7070	8	0	0	8	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0009	7071	8	6	2	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0010	7070	5	5	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0011	7067	4	1	3	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0012	7065	4	0	3	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0013	7068	4	4	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0014	7069	3	0	0	3	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0015	7069	3	3	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0016	7070	3	2	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0017	7068	3	3	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0018	7065	2	0	2	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0019	7068	2	2	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0020	7071	2	0	0	1	0	1	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0021	7070	2	0	0	2	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0022	7071	2	0	0	2	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0023	7071	2	0	0	1	0	1	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0024	7072	2	1	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0025	7070	2	0	0	2	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0026	7067	1	0	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0027	7070	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0028	7065	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0029	7065	1	0	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0030	7064	1	0	0	0	0	1	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0031	7065	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0032	7065	1	0	0	0	1	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0033	7066	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0034	7065	1	0	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0035	7094	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0036	7065	1	0	0	0	0	1	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0037	7066	1	0	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0038	7066	1	0	1	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0039	7070	1	0	0	1	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0040	7069	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0041	7069	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0042	7069	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0043	7069	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0044	7069	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538
DCUN1D1_chr3_182933074_182985538	0/0	t0045	7070	1	1	0	0	0	0	copy fasta	DCUN1D1	chr3	182933074	182985538