JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCUN1D2_chr13_113450819_113495711	0/0	t0040	2253	1	0	1	0	0	0	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	t0041	2253	1	0	0	1	0	0	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	t0042	2253	1	0	0	1	0	0	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D2_chr13_113450819_113495711	0/0	t0043	2253	1	0	0	1	0	0	copy fasta	DCUN1D2	chr13	113450819	113495711
DCUN1D3_chr16_20849925_20905358	1/1	t0001	5222	103	32	21	31	7	10	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0002	5222	64	1	13	41	2	7	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0003	5222	43	0	6	26	3	8	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0004	5222	36	1	0	32	0	3	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0005	5222	18	8	2	8	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0006	5222	10	5	2	1	0	2	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0007	5222	9	9	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0008	5223	9	0	1	8	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0009	5222	8	8	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0010	5223	8	4	2	2	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0011	5222	7	4	1	0	0	2	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0012	5223	4	0	0	4	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0013	5222	3	0	1	1	1	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0014	5223	3	0	0	3	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0015	5222	3	0	0	0	0	3	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0016	5222	3	0	2	0	1	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0017	5223	3	1	0	2	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0018	5222	2	2	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0019	5227	2	0	2	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0020	5222	2	2	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0021	5222	2	0	0	0	2	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0022	5222	2	0	2	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0023	5222	2	0	0	1	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0024	5223	2	0	1	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0025	5222	2	0	1	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0026	5208	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0027	5222	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0028	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0029	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0030	5222	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0031	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0032	5222	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0033	5222	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0034	5226	1	0	1	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0035	5222	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0036	5221	1	0	1	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0037	5222	1	0	1	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0038	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0039	5222	1	0	1	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0040	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0041	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0042	5224	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0043	5223	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0044	5223	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0045	5222	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0046	5222	1	0	0	0	0	1	copy fasta	DCUN1D3	chr16	20849925	20905358