JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCUN1D3_chr16_20849925_20905358	0/0	t0047	5221	1	0	1	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0048	5222	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0049	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0050	5222	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0051	5222	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0052	5223	1	0	0	1	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D3_chr16_20849925_20905358	0/0	t0053	5223	1	1	0	0	0	0	copy fasta	DCUN1D3	chr16	20849925	20905358
DCUN1D4_chr4_51838153_51921837	0/1	t0001	3343	94	33	16	33	1	10	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0002	3345	57	9	13	24	4	7	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	1/0	t0003	3344	31	4	6	11	2	7	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0004	3345	15	1	1	11	1	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0005	3343	10	2	5	0	2	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0006	3343	9	9	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0007	3343	6	0	0	6	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0008	3344	6	6	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0009	3344	5	2	0	3	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0010	3341	4	3	0	0	0	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0011	3345	3	0	3	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0012	3344	2	2	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0013	3344	2	1	0	0	0	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0014	3346	2	0	0	1	0	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0015	3345	1	0	0	0	0	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0016	3345	1	0	1	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0017	3343	1	0	0	1	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0018	3344	1	0	0	1	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0019	3344	1	1	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0020	3343	1	0	0	1	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0021	3343	1	1	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0022	3344	1	1	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0023	3343	1	0	0	0	0	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0024	3344	1	0	0	1	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0025	3345	1	0	0	1	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0026	3345	1	0	1	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0027	3345	1	1	0	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0028	3343	1	0	1	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0029	3345	1	0	0	0	0	1	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D4_chr4_51838153_51921837	0/0	t0030	3346	1	0	1	0	0	0	copy fasta	DCUN1D4	chr4	51838153	51921837
DCUN1D5_chr11_103045686_103097160	0/0	t0001	11955	30	4	8	14	2	2	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0002	11952	17	0	6	7	2	2	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/1	t0003	11955	13	1	2	5	0	4	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0004	11958	9	0	7	1	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0005	11952	9	8	1	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0006	11952	9	0	0	9	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0007	11963	8	0	0	8	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0008	11964	8	1	1	3	0	3	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0009	11958	8	0	1	7	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0010	11965	7	3	2	2	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0011	11954	6	6	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0012	11958	6	0	1	4	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0013	11962	6	1	0	4	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160