JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCUN1D5_chr11_103045686_103097160	0/0	t0114	11964	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0115	11966	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0116	11966	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0117	11967	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0118	11965	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0119	11964	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0120	11966	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0121	11952	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0122	11960	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0123	11952	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0124	11958	1	0	0	0	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0125	11958	1	0	0	0	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0126	11959	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0127	11964	1	0	0	0	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0128	11965	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0129	11958	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0130	11962	1	0	0	0	1	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0131	11958	1	0	0	1	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0132	11963	1	1	0	0	0	0	copy fasta	DCUN1D5	chr11	103045686	103097160
DCUN1D5_chr11_103045686_103097160	0/0	t0133	11963	1	0	0	0	0	1	copy fasta	DCUN1D5	chr11	103045686	103097160
DCXR_chr17_82030858_82042697	1/1	t0001	118	416	94	80	180	16	44	copy fasta	DCXR	chr17	82030858	82042697
DCXR_chr17_82030858_82042697	0/0	t0002	118	6	0	0	6	0	0	copy fasta	DCXR	chr17	82030858	82042697
DCX_chrX_111288779_111417192	1/1	t0001	7986	90	17	13	43	4	11	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0002	7987	11	0	0	9	0	2	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0003	7986	10	9	1	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0004	7988	5	0	1	4	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0005	7995	4	4	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0006	7992	3	3	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0007	7986	3	0	3	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0008	7988	3	0	1	2	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0009	7993	3	3	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0010	7987	2	0	0	1	0	1	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0011	7986	2	0	0	0	1	1	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0012	7986	2	2	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0013	7988	2	2	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0014	7984	2	2	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0015	7993	2	2	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0016	7996	2	2	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0017	7986	2	2	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0018	7986	2	1	1	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0019	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0020	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0021	7986	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0022	7987	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0023	7988	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0024	7986	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0025	7990	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0026	7987	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0027	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0028	7986	1	0	1	0	0	0	copy fasta	DCX	chrX	111288779	111417192