Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADPRHL1_chr13_113394611_113458488	0/0	t0046	3822	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0047	3819	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0048	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0049	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0050	3819	1	0	0	0	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0051	3818	1	0	0	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	1/0	t0052	3819	1	0	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0053	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0054	3819	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0055	3817	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0056	3818	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0057	3818	1	0	0	0	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0058	3819	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0059	3819	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0060	3819	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0061	3819	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0062	3818	1	0	0	0	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0063	3818	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0064	3818	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0065	3813	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0066	3813	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0067	3812	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0068	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0069	3815	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0070	3815	1	0	0	0	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0071	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0072	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0073	3815	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0074	3815	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0075	3822	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0076	3817	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0077	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0078	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0079	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0080	3815	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0081	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0082	3815	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0083	3814	1	0	0	0	0	1	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0084	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0085	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0086	3821	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0087	3818	1	0	0	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0088	3821	1	0	0	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0089	3818	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0090	3822	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0091	3817	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0092	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0093	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0094	3812	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0095	3815	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488