JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DCX_chrX_111288779_111417192	0/0	t0029	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0030	7988	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0031	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0032	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0033	7985	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0034	7986	1	0	0	0	0	1	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0035	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0036	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0037	7987	1	0	1	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0038	7985	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0039	7986	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0040	7986	1	0	1	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0041	7986	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0042	7986	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0043	7983	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0044	7985	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0045	7985	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0046	7987	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0047	7983	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0048	7984	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0049	7992	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0050	7982	1	1	0	0	0	0	copy fasta	DCX	chrX	111288779	111417192
DCX_chrX_111288779_111417192	0/0	t0051	7986	1	0	0	1	0	0	copy fasta	DCX	chrX	111288779	111417192
DDA1_chr19_17304563_17328298	1/0	t0001	3735	74	0	13	53	0	7	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/1	t0002	3735	69	7	21	26	5	9	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0003	3735	56	10	10	21	2	13	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0004	3735	52	33	11	0	3	5	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0005	3735	39	6	4	26	2	1	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0006	3735	28	0	11	17	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0007	3735	19	16	3	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0008	3735	10	4	3	0	3	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0009	3734	3	3	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0010	3735	3	0	2	0	0	1	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0011	3735	3	0	0	3	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0012	3735	2	2	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0013	3735	2	2	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0014	3734	2	0	0	1	0	1	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0015	3734	2	0	0	2	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0016	3736	2	2	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0017	3736	2	0	0	1	0	1	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0018	3735	1	0	0	0	0	1	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0019	3735	1	0	0	1	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0020	3735	1	0	0	0	0	1	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0021	3736	1	0	1	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0022	3735	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0023	3735	1	0	0	1	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0024	3735	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0025	3735	1	0	1	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0026	3735	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0027	3735	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298