JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDA1_chr19_17304563_17328298	0/0	t0028	3734	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0029	3735	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0030	3735	1	0	1	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0031	3735	1	0	0	1	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0032	3735	1	0	0	1	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0033	3735	1	0	0	1	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0034	3736	1	0	0	1	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0035	3735	1	0	1	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0036	3734	1	0	0	0	1	0	copy fasta	DDA1	chr19	17304563	17328298
DDA1_chr19_17304563_17328298	0/0	t0037	3735	1	1	0	0	0	0	copy fasta	DDA1	chr19	17304563	17328298
DDAH1_chr1_85313485_85470159	0/0	t0001	3083	74	21	3	43	2	5	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0002	3084	59	2	22	26	1	8	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0003	3083	49	1	5	28	2	13	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0004	3083	42	0	5	35	2	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	1/0	t0005	3082	36	7	8	16	1	3	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0006	3083	36	5	14	10	3	4	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0007	3083	27	16	6	0	2	3	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0008	3080	15	0	3	11	0	1	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/1	t0009	3082	13	2	4	0	1	5	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0010	3083	9	0	0	8	0	1	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0011	3084	9	9	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0012	3083	4	3	1	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0013	3083	4	4	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0014	3083	3	3	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0015	3083	3	0	0	2	0	1	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0016	3083	3	3	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0017	3083	3	3	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0018	3083	2	2	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0019	3083	2	2	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0020	3083	2	0	0	2	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0021	3084	2	2	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0022	3083	2	2	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0023	3084	2	2	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0024	3083	1	0	1	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0025	3083	1	0	0	1	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0026	3083	1	0	1	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0027	3083	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0028	3084	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0029	3084	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0030	3083	1	0	0	1	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0031	3084	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0032	3084	1	0	1	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0033	3083	1	0	0	1	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0034	3085	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0035	3084	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0036	3083	1	0	0	1	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0037	3083	1	1	0	0	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH1_chr1_85313485_85470159	0/0	t0038	3084	1	0	0	1	0	0	copy fasta	DDAH1	chr1	85313485	85470159
DDAH2_chr6_31722040_31734299	0/1	t0001	336	383	88	82	157	18	37	copy fasta	DDAH2	chr6	31722040	31734299
DDAH2_chr6_31722040_31734299	0/0	t0002	336	3	0	2	0	0	1	copy fasta	DDAH2	chr6	31722040	31734299