JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDAH2_chr6_31722040_31734299	0/0	t0003	348	1	0	0	1	0	0	copy fasta	DDAH2	chr6	31722040	31734299
DDB1_chr11_61294451_61338105	1/1	t0001	823	143	64	31	21	8	17	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	t0002	823	31	18	3	8	0	2	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	t0003	823	2	2	0	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	t0004	823	2	2	0	0	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	t0005	823	1	0	0	1	0	0	copy fasta	DDB1	chr11	61294451	61338105
DDB1_chr11_61294451_61338105	0/0	t0006	823	1	0	0	0	0	1	copy fasta	DDB1	chr11	61294451	61338105
DDB2_chr11_47209974_47244217	1/1	t0001	532	295	49	71	118	13	42	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	t0002	532	44	40	4	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	t0003	532	17	0	1	11	3	2	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	t0004	530	3	3	0	0	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDB2_chr11_47209974_47244217	0/0	t0005	532	1	0	0	1	0	0	copy fasta	DDB2	chr11	47209974	47244217
DDC_chr7_50453442_50570405	1/1	t0001	570	325	68	63	148	11	33	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	t0002	570	21	1	5	11	3	1	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	t0003	570	6	6	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	t0004	570	5	5	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	t0005	570	1	1	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	t0006	570	1	1	0	0	0	0	copy fasta	DDC	chr7	50453442	50570405
DDC_chr7_50453442_50570405	0/0	t0007	570	1	0	0	1	0	0	copy fasta	DDC	chr7	50453442	50570405
DDHD1_chr14_53031755_53158323	0/0	t0001	10243	51	3	14	27	2	5	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0002	10241	44	11	8	20	3	2	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0003	10241	35	1	9	23	1	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0004	10239	19	9	4	1	2	3	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0005	10243	17	0	1	9	0	7	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0006	10243	13	10	3	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0007	10247	7	0	1	5	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0008	10238	6	6	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0009	10245	5	0	0	4	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0010	10241	5	4	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0011	10241	4	4	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0012	10247	3	3	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0013	10243	3	0	1	0	2	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0014	10241	3	0	1	0	0	2	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	1/0	t0015	10239	3	2	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0016	10249	3	3	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0017	10238	3	3	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/1	t0018	10238	3	0	2	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0019	10245	2	0	1	0	1	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0020	10245	2	0	0	2	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0021	10243	2	0	0	2	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0022	10241	2	0	0	2	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0023	10241	2	0	0	2	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0024	10245	2	0	0	2	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0025	10247	2	0	0	2	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0026	10243	2	2	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0027	10249	2	2	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0028	10255	2	2	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0029	10234	2	2	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0030	10241	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0031	10239	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323