JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDHD1_chr14_53031755_53158323	0/0	t0032	10243	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0033	10243	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0034	10243	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0035	10243	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0036	10243	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0037	10243	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0038	10243	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0039	10243	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0040	10243	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0041	10241	1	0	0	0	1	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0042	10241	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0043	10241	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0044	10239	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0045	10247	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0046	10243	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0047	10241	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0048	10241	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0049	10241	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0050	10241	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0051	10241	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0052	10241	1	0	0	0	0	1	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0053	10241	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0054	10241	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0055	10237	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0056	10241	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0057	10245	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0058	10243	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0059	10243	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0060	10245	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0061	10245	1	0	0	1	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0062	10243	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0063	10243	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0064	10243	1	0	1	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0065	10241	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0066	10241	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0067	10239	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0068	10247	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0069	10247	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD1_chr14_53031755_53158323	0/0	t0070	10247	1	1	0	0	0	0	copy fasta	DDHD1	chr14	53031755	53158323
DDHD2_chr8_38226585_38267836	1/1	t0001	2547	147	36	23	60	9	17	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0002	2547	92	12	18	54	5	3	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0003	2547	7	0	0	7	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0004	2547	2	2	0	0	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0005	2547	2	0	0	2	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0006	2547	1	1	0	0	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0007	2547	1	1	0	0	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0008	2547	1	0	0	1	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDHD2_chr8_38226585_38267836	0/0	t0009	2547	1	0	1	0	0	0	copy fasta	DDHD2	chr8	38226585	38267836
DDI1_chr11_104031640_104044196	1/0	t0001	1367	188	46	27	82	8	24	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/1	t0002	1367	151	0	41	90	6	13	copy fasta	DDI1	chr11	104031640	104044196