JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDI1_chr11_104031640_104044196	0/0	t0003	1367	28	2	0	26	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0004	1367	19	9	1	7	0	2	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0005	1367	18	10	1	4	1	2	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0006	1367	13	4	1	6	1	1	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0007	1367	7	7	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0008	1367	6	6	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0009	1367	4	4	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0010	1367	4	0	4	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0011	1367	3	3	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0012	1356	2	0	0	0	0	2	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0013	1367	1	0	1	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0014	1367	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0015	1367	1	0	0	1	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0016	1367	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI1_chr11_104031640_104044196	0/0	t0017	1367	1	1	0	0	0	0	copy fasta	DDI1	chr11	104031640	104044196
DDI2_chr1_15612458_15674044	0/0	t0001	9469	47	2	14	25	2	4	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/1	t0002	9468	37	12	5	15	1	3	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	1/0	t0003	9468	30	0	12	8	5	4	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0004	9470	14	4	6	0	1	3	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0005	9471	7	7	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0006	9470	6	0	0	6	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0007	9468	6	6	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0008	9470	5	5	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0009	9469	5	0	0	5	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0010	9470	5	5	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0011	9471	4	3	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0012	9474	4	2	0	0	0	2	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0013	9464	4	3	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0014	9469	3	0	0	0	0	3	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0015	9471	3	0	1	0	2	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0016	9468	3	0	0	3	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0017	9474	2	0	1	0	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0018	9474	2	2	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0019	9471	2	0	0	1	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0020	9474	2	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0021	9472	2	2	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0022	9471	2	0	2	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0023	9471	2	2	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0024	9474	2	2	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0025	9469	2	0	0	2	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0026	9471	2	2	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0027	9469	2	0	0	2	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0028	9470	1	0	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0029	9474	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0030	9473	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0031	9469	1	0	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0032	9471	1	0	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0033	9471	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0034	9470	1	0	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0035	9469	1	0	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044