JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
DDI2_chr1_15612458_15674044	0/0	t0036	9471	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0037	9471	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0038	9470	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0039	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0040	9471	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0041	9470	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0042	9471	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0043	9468	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0044	9467	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0045	9468	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0046	9473	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0047	9474	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0048	9469	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0049	9469	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0050	9474	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0051	9471	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0052	9470	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0053	9465	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0054	9470	1	0	0	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0055	9470	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0056	9470	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0057	9479	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0058	9469	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0059	9468	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0060	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0061	9470	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0062	9470	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0063	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0064	9468	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0065	9469	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0066	9469	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0067	9469	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0068	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0069	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0070	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0071	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0072	9469	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0073	9468	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0074	9470	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0075	9469	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0076	9474	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0077	9471	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0078	9469	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0079	9469	1	0	0	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0080	9469	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0081	9468	1	0	0	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0082	9470	1	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0083	9468	1	0	0	1	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0084	9468	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0085	9468	1	1	0	0	0	copy fasta	DDI2	chr1	15612458	15674044