JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDI2_chr1_15612458_15674044	0/0	t0086	9468	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0087	9469	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0088	9469	1	0	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0089	9469	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0090	9469	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0091	9468	1	0	0	0	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0092	9457	1	0	0	1	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0093	9469	1	0	0	0	0	1	copy fasta	DDI2	chr1	15612458	15674044
DDI2_chr1_15612458_15674044	0/0	t0094	9470	1	1	0	0	0	0	copy fasta	DDI2	chr1	15612458	15674044
DDIAS_chr11_82896736_82939659	1/1	t0001	528	178	29	27	98	7	15	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0002	528	125	30	25	49	2	19	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0003	528	29	16	9	0	0	4	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0004	528	17	5	8	1	1	2	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0005	528	7	7	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0006	528	7	7	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0007	528	3	2	1	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0008	528	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIAS_chr11_82896736_82939659	0/0	t0009	528	1	1	0	0	0	0	copy fasta	DDIAS	chr11	82896736	82939659
DDIT3_chr12_57511593_57525514	1/1	t0001	394	312	91	68	105	12	34	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	t0002	394	9	0	0	9	0	0	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	t0003	394	4	0	0	4	0	0	copy fasta	DDIT3	chr12	57511593	57525514
DDIT3_chr12_57511593_57525514	0/0	t0004	394	1	1	0	0	0	0	copy fasta	DDIT3	chr12	57511593	57525514
DDIT4L_chr4_100180870_100195468	1/0	t0001	2023	108	13	22	51	2	19	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0002	2023	89	3	18	65	0	3	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0003	2023	36	1	10	18	1	6	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0004	2023	26	2	9	9	1	5	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0005	2023	22	10	7	2	1	2	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0006	2023	21	0	1	20	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0007	2023	14	1	6	0	3	4	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0008	2023	10	10	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0009	2027	9	7	2	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0010	2023	9	0	0	9	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0011	2023	9	0	0	9	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/1	t0012	2023	7	1	2	0	3	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0013	2023	6	0	0	6	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0014	2023	6	6	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0015	2023	6	6	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0016	2023	5	5	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0017	2023	5	2	1	0	0	2	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0018	2023	4	4	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0019	2023	4	0	0	4	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0020	2023	4	4	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0021	2023	3	1	0	2	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0022	2023	3	3	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0023	2023	3	0	0	3	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0024	2023	3	0	0	3	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0025	2023	2	0	0	0	0	2	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0026	2023	2	0	1	0	1	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0027	2023	2	1	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0028	2023	2	0	0	2	0	0	copy fasta	DDIT4L	chr4	100180870	100195468