JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDIT4L_chr4_100180870_100195468	0/0	t0029	2023	2	0	0	2	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0030	2023	2	0	0	1	0	1	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0031	2023	2	2	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0032	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0033	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0034	2023	1	0	0	0	1	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0035	2023	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0036	2023	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0037	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0038	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0039	2023	1	0	0	0	0	1	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0040	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0041	2023	1	0	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0042	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0043	2023	1	0	0	0	0	1	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0044	2023	1	0	0	0	0	1	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0045	2023	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0046	2023	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0047	2023	1	0	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0048	2023	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0049	2023	1	0	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0050	2023	1	0	0	1	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0051	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0052	2023	1	0	0	0	1	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0053	2023	1	0	1	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0054	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0055	2023	1	0	0	0	0	1	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0056	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4L_chr4_100180870_100195468	0/0	t0057	2023	1	1	0	0	0	0	copy fasta	DDIT4L	chr4	100180870	100195468
DDIT4_chr10_72268924_72281036	0/0	t0001	1046	130	12	20	73	4	21	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	1/1	t0002	1046	127	31	38	27	6	23	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0003	1046	62	32	3	26	0	1	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0004	1046	5	4	1	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0005	1046	5	5	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0006	1046	4	0	2	0	0	2	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0007	1045	4	3	1	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0008	1043	3	3	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0009	1046	2	0	2	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0010	1046	2	2	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0011	1046	1	1	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0012	1046	1	0	0	0	0	1	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0013	1046	1	1	0	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDIT4_chr10_72268924_72281036	0/0	t0014	1046	1	0	1	0	0	0	copy fasta	DDIT4	chr10	72268924	72281036
DDN_chr12_48990149_49004375	1/1	t0001	1680	166	25	32	78	10	19	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0002	1680	150	40	20	69	3	18	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0003	1680	22	15	4	0	3	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0004	1680	5	4	1	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0005	1680	2	0	0	0	0	2	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0006	1680	1	0	0	0	0	1	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0007	1680	1	1	0	0	0	0	copy fasta	DDN	chr12	48990149	49004375