JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDN_chr12_48990149_49004375	0/0	t0008	1680	1	0	1	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0009	1680	1	0	0	1	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0010	1680	1	1	0	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0011	1680	1	0	1	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDN_chr12_48990149_49004375	0/0	t0012	1680	1	0	1	0	0	0	copy fasta	DDN	chr12	48990149	49004375
DDOST_chr1_20646777_20666369	0/1	t0001	610	156	35	38	60	6	16	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0002	618	76	11	14	43	3	5	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0003	622	36	1	6	26	0	3	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0004	638	35	0	2	29	1	3	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0005	626	18	7	3	3	4	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	1/0	t0006	622	14	11	1	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0007	632	14	4	1	7	0	2	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0008	638	14	2	0	12	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0009	642	12	0	0	6	2	4	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0010	634	11	4	2	3	0	2	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0011	634	10	0	0	9	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0012	612	8	8	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0013	618	8	0	1	5	0	2	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0014	630	6	1	2	2	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0015	636	5	1	0	3	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0016	646	4	0	0	4	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0017	626	4	0	1	0	2	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0018	642	3	0	2	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0019	638	3	2	1	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0020	650	2	0	0	2	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0021	634	2	2	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0022	610	2	2	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0023	638	1	1	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0024	636	1	1	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0025	628	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0026	638	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0027	642	1	0	1	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0028	639	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0029	638	1	0	0	0	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0030	640	1	0	0	0	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0031	641	1	0	0	1	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0032	630	1	0	1	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0033	638	1	0	0	0	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0034	610	1	0	0	0	0	1	copy fasta	DDOST	chr1	20646777	20666369
DDOST_chr1_20646777_20666369	0/0	t0035	610	1	1	0	0	0	0	copy fasta	DDOST	chr1	20646777	20666369
DDO_chr6_110386784_110420575	1/0	t0001	1105	203	23	40	106	6	27	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/1	t0002	1105	190	51	39	72	8	19	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0003	1105	10	8	2	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0004	1105	5	5	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0005	1105	3	3	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0006	1105	3	3	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0007	1105	2	2	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0008	1105	2	0	0	2	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0009	1105	1	1	0	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0010	1105	1	0	0	1	0	0	copy fasta	DDO	chr6	110386784	110420575