JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDO_chr6_110386784_110420575	0/0	t0011	1105	1	0	0	1	0	0	copy fasta	DDO	chr6	110386784	110420575
DDO_chr6_110386784_110420575	0/0	t0012	1105	1	0	1	0	0	0	copy fasta	DDO	chr6	110386784	110420575
DDR1_chr6_30879519_30905156	0/0	t0001	1095	210	54	44	84	7	21	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/1	t0002	1095	155	17	20	91	8	18	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0003	1095	21	15	3	0	0	3	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0004	1095	19	0	2	17	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0005	1095	11	2	4	0	1	4	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0006	1095	4	2	2	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0007	1095	3	0	0	3	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0008	1095	2	0	0	2	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0009	1095	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0010	1095	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0011	1095	1	0	1	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0012	1095	1	1	0	0	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0013	1095	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR1_chr6_30879519_30905156	0/0	t0014	1095	1	0	0	1	0	0	copy fasta	DDR1	chr6	30879519	30905156
DDR2_chr1_162627464_162792405	0/0	t0001	7515	86	15	15	44	3	9	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0002	7516	63	8	15	32	2	6	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0003	7516	36	9	0	25	1	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0004	7516	12	9	1	1	1	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0005	7516	11	0	0	11	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0006	7519	7	7	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0007	7510	5	5	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0008	7516	5	1	1	2	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0009	7515	4	0	4	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0010	7515	3	0	0	3	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0011	7516	3	3	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0012	7516	3	1	2	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0013	7516	3	0	1	0	1	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	1/0	t0014	7519	3	2	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0015	7516	3	3	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0016	7515	2	0	0	1	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0017	7515	2	0	2	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0018	7515	2	0	0	0	0	2	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0019	7515	2	0	2	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0020	7516	2	0	0	0	0	2	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0021	7516	2	0	0	2	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0022	7516	2	2	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0023	7516	2	2	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0024	7517	2	0	2	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0025	7515	2	0	0	1	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0026	7516	2	1	0	0	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0027	7515	1	0	0	1	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0028	7515	1	0	0	1	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0029	7515	1	0	0	0	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0030	7515	1	0	0	0	1	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0031	7515	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0032	7515	1	0	0	0	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0033	7515	1	0	1	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0034	7515	1	0	0	0	0	1	copy fasta	DDR2	chr1	162627464	162792405