Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADPRHL1_chr13_113394611_113458488	0/0	t0096	3814	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0097	3820	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0098	3820	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0099	3822	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0100	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0101	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0102	3820	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0103	3821	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0104	3821	1	0	1	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0105	3821	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0106	3821	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0107	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0108	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0109	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0110	3815	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0111	3817	1	0	0	0	1	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0112	3239	1	0	0	1	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRHL1_chr13_113394611_113458488	0/0	t0113	3819	1	1	0	0	0	0	copy fasta	ADPRHL1	chr13	113394611	113458488
ADPRH_chr3_119574492_119594945	1/1	t0001	2550	235	37	41	110	13	32	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0002	2550	162	32	17	102	2	9	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0003	2550	8	0	5	0	1	2	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0004	2550	7	0	7	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0005	2553	4	4	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0006	2554	4	4	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0007	2550	3	3	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0008	2550	3	3	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0009	2550	2	2	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0010	2550	2	0	0	2	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0011	2550	2	1	1	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0012	2550	2	0	0	2	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0013	2552	2	2	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0014	2550	2	0	2	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0015	2553	2	2	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0016	2550	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0017	2550	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0018	2550	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0019	2551	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0020	2554	1	0	1	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0021	2550	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0022	2550	1	0	0	1	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0023	2550	1	0	0	1	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0024	2550	1	0	0	0	0	1	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0025	2550	1	0	0	0	0	1	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0026	2550	1	0	0	0	0	1	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0027	2540	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0028	2550	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRH_chr3_119574492_119594945	0/0	t0029	2553	1	1	0	0	0	0	copy fasta	ADPRH	chr3	119574492	119594945
ADPRM_chr17_10692594_10716558	1/1	t0001	506	215	20	37	125	8	23	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0002	506	139	36	28	54	6	15	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0003	506	24	23	1	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558