JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDR2_chr1_162627464_162792405	0/0	t0035	7514	1	0	0	0	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0036	7516	1	0	1	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0037	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0038	7516	1	0	0	0	1	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0039	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0040	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/1	t0041	7516	1	0	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0042	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0043	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0044	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0045	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0046	7516	1	0	0	0	0	1	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0047	7516	1	0	0	1	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0048	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0049	7520	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0050	7519	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0051	7515	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0052	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0053	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0054	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0055	7516	1	1	0	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0056	7516	1	0	0	1	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0057	7516	1	0	0	1	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0058	7516	1	0	0	1	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDR2_chr1_162627464_162792405	0/0	t0059	7516	1	0	1	0	0	0	copy fasta	DDR2	chr1	162627464	162792405
DDRGK1_chr20_3185350_3209682	1/1	t0001	359	409	83	68	196	15	45	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0002	359	20	7	9	0	3	1	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0003	359	3	0	0	3	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0004	359	2	2	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0005	359	1	0	1	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0006	359	1	0	0	1	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0007	359	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDRGK1_chr20_3185350_3209682	0/0	t0008	359	1	1	0	0	0	0	copy fasta	DDRGK1	chr20	3185350	3209682
DDTL_chr22_23961888_23977556	0/0	t0001	1178	123	13	33	52	8	17	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0002	1178	99	14	18	49	6	12	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0003	1178	23	15	6	1	1	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0004	1172	19	0	0	19	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0005	1178	15	15	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0006	1178	9	0	0	8	0	1	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0007	1177	6	6	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0008	1178	6	6	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0009	1178	5	5	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0010	1178	4	4	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0011	1178	3	0	1	2	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0012	1178	3	1	1	0	1	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0013	1178	1	1	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0014	1178	1	1	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0015	1173	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0016	1178	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0017	1178	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556