JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDTL_chr22_23961888_23977556	0/0	t0018	1178	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0019	1178	1	0	0	1	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0020	1178	1	0	1	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDTL_chr22_23961888_23977556	0/0	t0021	1177	1	1	0	0	0	0	copy fasta	DDTL	chr22	23961888	23977556
DDT_chr22_23966370_23979441	0/0	t0001	209	313	74	60	131	18	30	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	t0002	209	1	1	0	0	0	0	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	t0003	209	1	1	0	0	0	0	copy fasta	DDT	chr22	23966370	23979441
DDT_chr22_23966370_23979441	0/0	t0004	208	1	0	0	1	0	0	copy fasta	DDT	chr22	23966370	23979441
DDX10_chr11_108660069_108945927	1/1	t0001	590	296	72	40	147	8	27	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0002	590	14	12	2	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0003	593	5	5	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0004	590	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0005	590	1	0	0	1	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0006	590	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0007	590	1	1	0	0	0	0	copy fasta	DDX10	chr11	108660069	108945927
DDX10_chr11_108660069_108945927	0/0	t0008	590	1	0	0	0	0	1	copy fasta	DDX10	chr11	108660069	108945927
DDX11_chr12_31068860_31109799	0/0	t0001	1200	207	34	38	111	6	18	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0002	1200	60	0	7	47	1	5	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	1/1	t0003	1200	50	22	11	10	2	3	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0004	1200	47	2	12	23	2	8	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0005	1200	13	3	4	0	2	4	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0006	1200	9	9	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0007	1200	3	3	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0008	1200	3	0	0	1	0	2	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0009	1200	3	3	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0010	1200	2	2	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0011	1200	2	2	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0012	1200	2	1	0	0	1	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0013	1200	2	0	1	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0014	1200	2	1	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0015	1200	2	0	2	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0016	1200	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0017	1200	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0018	1200	1	0	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0019	1200	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0020	1200	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0021	1200	1	0	1	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0022	1200	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0023	1200	1	0	0	1	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0024	1200	1	0	0	0	0	1	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0025	1215	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX11_chr12_31068860_31109799	0/0	t0026	1200	1	1	0	0	0	0	copy fasta	DDX11	chr12	31068860	31109799
DDX17_chr22_38478438_38511311	0/0	t0001	2571	101	14	21	49	4	13	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/1	t0002	2569	91	10	10	56	2	12	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0003	2572	38	0	0	37	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0004	2571	20	18	2	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0005	2569	12	1	8	1	0	2	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0006	2568	12	7	3	0	1	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0007	2570	9	9	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0008	2572	8	8	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311