JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX17_chr22_38478438_38511311	0/0	t0009	2570	5	5	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0010	2573	5	0	2	3	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0011	2567	4	4	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0012	2569	4	0	0	4	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0013	2571	4	0	0	4	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0014	2572	3	0	0	3	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0015	2571	3	0	1	2	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0016	2571	3	1	0	0	0	2	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0017	2572	3	0	1	1	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0018	2571	2	2	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0019	2572	2	2	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0020	2570	2	0	1	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0021	2570	2	2	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0022	2571	2	2	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0023	2570	2	0	1	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0024	2570	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0025	2568	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0026	2569	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0027	2572	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	1/0	t0028	2572	1	0	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0029	2570	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0030	2567	1	0	1	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0031	2568	1	0	0	0	1	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0032	2571	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0033	2569	1	0	0	0	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0034	2571	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0035	2571	1	0	1	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0036	2569	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0037	2573	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0038	2573	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0039	2573	1	0	0	0	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0040	2571	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0041	2571	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0042	2571	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0043	2571	1	0	0	0	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0044	2569	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0045	2571	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0046	2568	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0047	2569	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0048	2571	1	0	0	0	0	1	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0049	2572	1	0	0	1	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX17_chr22_38478438_38511311	0/0	t0050	2572	1	1	0	0	0	0	copy fasta	DDX17	chr22	38478438	38511311
DDX18_chr2_117809691_117837377	0/0	t0001	1741	132	6	24	87	4	11	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0002	1741	81	49	12	5	6	9	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	1/0	t0003	1741	56	0	8	44	0	3	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0004	1741	44	13	14	8	3	6	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/1	t0005	1741	41	0	9	23	1	7	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0006	1741	22	11	8	0	2	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0007	1741	7	0	0	5	0	2	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0008	1741	5	4	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377