JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX18_chr2_117809691_117837377	0/0	t0009	1741	4	3	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0010	1742	4	4	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0011	1747	3	3	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0012	1741	2	2	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0013	1742	2	0	0	1	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0014	1741	2	0	0	0	0	2	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0015	1741	1	0	0	1	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0016	1741	1	1	0	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0017	1741	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0018	1741	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0019	1742	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0020	1741	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0021	1741	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0022	1741	1	0	1	0	0	0	copy fasta	DDX18	chr2	117809691	117837377
DDX18_chr2_117809691_117837377	0/0	t0023	1741	1	0	0	0	0	1	copy fasta	DDX18	chr2	117809691	117837377
DDX19A_chr16_70341903_70378383	1/1	t0001	1487	328	40	67	178	9	32	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0002	1487	14	0	7	1	0	6	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0003	1487	13	13	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0004	1487	7	7	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0005	1487	5	5	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0006	1485	5	1	1	0	2	1	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0007	1487	3	0	3	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0008	1484	3	3	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0009	1485	3	3	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0010	1487	1	0	0	0	0	1	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0011	1487	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0012	1487	1	0	1	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0013	1487	1	0	0	0	1	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0014	1487	1	0	1	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0015	1487	1	0	0	1	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0016	1487	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0017	1487	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0018	1487	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0019	1484	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19A_chr16_70341903_70378383	0/0	t0020	1487	1	1	0	0	0	0	copy fasta	DDX19A	chr16	70341903	70378383
DDX19B_chr16_70294186_70340305	1/1	t0001	1836	278	51	60	126	12	27	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0002	1836	31	2	10	15	2	2	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0003	1836	13	13	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0004	1836	2	0	0	2	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0005	1836	2	2	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0006	1836	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0007	1836	1	0	0	0	0	1	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0008	1836	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0009	1836	1	0	0	0	0	1	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0010	1836	1	0	0	1	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0011	1836	1	0	1	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0012	1836	1	0	1	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0013	1836	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0014	1836	1	1	0	0	0	0	copy fasta	DDX19B	chr16	70294186	70340305
DDX19B_chr16_70294186_70340305	0/0	t0015	1836	1	0	0	0	0	1	copy fasta	DDX19B	chr16	70294186	70340305