JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX1_chr2_15586868_15636101	0/1	t0001	262	280	76	44	126	7	26	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	1/0	t0002	262	66	8	24	17	5	11	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	t0003	262	43	2	0	40	0	1	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	t0004	262	4	4	0	0	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	t0005	262	1	0	0	0	0	1	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	t0006	262	1	0	0	0	0	1	copy fasta	DDX1	chr2	15586868	15636101
DDX1_chr2_15586868_15636101	0/0	t0007	262	1	0	0	1	0	0	copy fasta	DDX1	chr2	15586868	15636101
DDX20_chr1_111750901_111773000	1/1	t0001	1126	284	41	53	149	10	29	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0002	1124	53	38	6	1	4	4	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0003	1122	35	11	5	16	0	3	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0004	1126	26	0	6	18	0	2	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0005	1124	2	2	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0006	1126	1	0	0	0	0	1	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0007	1126	1	0	0	0	0	1	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0008	1124	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX20_chr1_111750901_111773000	0/0	t0009	1126	1	1	0	0	0	0	copy fasta	DDX20	chr1	111750901	111773000
DDX21_chr10_68951170_68990068	0/1	t0001	2309	98	22	11	48	5	11	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0002	2311	97	8	15	61	2	11	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	1/0	t0003	2313	48	7	13	14	3	10	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0004	2312	29	3	4	19	0	3	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0005	2312	22	18	3	1	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0006	2310	16	6	6	1	0	3	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0007	2309	12	11	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0008	2311	9	0	0	9	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0009	2310	6	1	1	4	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0010	2311	6	6	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0011	2308	5	1	0	3	0	1	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0012	2308	4	4	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0013	2311	3	2	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0014	2311	2	0	0	2	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0015	2314	2	0	0	2	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0016	2310	1	0	0	1	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0017	2309	1	0	1	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0018	2311	1	1	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0019	2313	1	0	0	1	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0020	2314	1	0	0	0	0	1	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0021	2313	1	1	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX21_chr10_68951170_68990068	0/0	t0022	2311	1	1	0	0	0	0	copy fasta	DDX21	chr10	68951170	68990068
DDX23_chr12_48824756_48857163	1/0	t0001	794	174	44	37	64	6	22	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0002	794	122	7	26	72	4	13	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0003	794	18	17	1	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0004	794	8	0	0	6	0	2	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/1	t0005	795	7	1	2	0	1	2	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0006	794	6	6	0	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0007	794	5	5	0	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0008	794	4	2	0	0	1	1	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0009	794	2	2	0	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0010	794	1	1	0	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX23_chr12_48824756_48857163	0/0	t0011	794	1	1	0	0	0	0	copy fasta	DDX23	chr12	48824756	48857163
DDX24_chr14_94043287_94086202	0/1	t0001	2994	74	17	19	21	9	7	copy fasta	DDX24	chr14	94043287	94086202