JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX24_chr14_94043287_94086202	0/0	t0002	2994	69	0	1	54	1	13	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0003	2999	68	1	14	46	1	6	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0004	3000	35	21	7	1	4	2	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0005	3002	31	8	1	21	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0006	2999	10	10	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0007	3001	9	0	3	3	2	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0008	2995	9	0	0	9	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0009	2995	7	7	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0010	3001	5	4	1	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0011	2993	5	4	1	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0012	3001	3	3	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0013	2999	3	3	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0014	3002	3	3	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0015	3000	3	0	0	3	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0016	2994	3	0	3	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0017	3000	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0018	3000	2	0	2	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0019	2995	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0020	2999	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0021	2999	2	2	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0022	3002	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0023	2999	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0024	2999	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0025	3001	1	0	1	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0026	3001	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0027	3002	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0028	3001	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0029	2998	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0030	2999	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0031	2999	1	0	0	0	1	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0032	2999	1	0	1	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0033	2999	1	0	1	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0034	3000	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0035	3001	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0036	2995	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0037	2993	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0038	2993	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0039	2994	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0040	2994	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0041	2994	1	0	1	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0042	2994	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0043	2999	1	1	0	0	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0044	3000	1	0	0	0	0	1	copy fasta	DDX24	chr14	94043287	94086202
DDX24_chr14_94043287_94086202	0/0	t0045	2994	1	0	0	1	0	0	copy fasta	DDX24	chr14	94043287	94086202
DDX25_chr11_125899508_125933843	0/0	t0001	5973	36	4	7	20	2	3	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0002	5973	29	0	4	23	0	2	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0003	5973	24	0	1	23	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0004	5972	17	0	7	3	3	4	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/1	t0005	5973	15	0	2	9	1	2	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0006	5973	15	0	4	11	0	0	copy fasta	DDX25	chr11	125899508	125933843