JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX25_chr11_125899508_125933843	0/0	t0057	5973	2	2	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0058	5972	2	0	0	0	2	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0059	5972	2	0	0	2	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0060	5971	2	0	0	2	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0061	5972	2	0	0	2	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0062	5973	2	0	0	1	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0063	5973	2	0	0	0	0	2	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0064	5973	2	2	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0065	5973	1	0	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0066	5972	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0067	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0068	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0069	5973	1	0	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0070	5973	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0071	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0072	5972	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0073	5972	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0074	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0075	5973	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0076	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0077	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0078	5972	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0079	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0080	5972	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0081	5972	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0082	5972	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0083	5972	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0084	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0085	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0086	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0087	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0088	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0089	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0090	5974	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0091	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0092	5974	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0093	5974	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0094	5974	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0095	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0096	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0097	5972	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0098	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0099	5974	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0100	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0101	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0102	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0103	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0104	5973	1	0	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0105	5973	1	0	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0106	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843