JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
DDX25_chr11_125899508_125933843	0/0	t0107	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0108	5972	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0109	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0110	5973	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0111	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0112	5972	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0113	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0114	5974	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0115	5974	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0116	5974	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0117	5975	1	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0118	5972	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0119	5973	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0120	5972	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0121	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0122	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0123	5972	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0124	5973	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0125	5972	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0126	5973	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0127	5974	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0128	5974	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0129	5972	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0130	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0131	5972	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0132	5972	1	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0133	5971	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0134	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0135	5973	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0136	5985	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0137	5985	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0138	5972	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0139	5972	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0140	5972	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0141	5972	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0142	5971	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0143	5972	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0144	5972	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0145	5972	1	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0146	5972	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0147	5973	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0148	5971	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0149	5972	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0150	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0151	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0152	5973	1	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0153	5972	1	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0154	5972	1	0	0	0	1	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0155	5973	1	0	0	1	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0156	5973	1	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843