JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX25_chr11_125899508_125933843	0/0	t0157	5972	1	0	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0158	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0159	5972	1	0	1	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0160	5973	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0161	5972	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0162	5974	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0163	5963	1	0	0	1	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0164	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX25_chr11_125899508_125933843	0/0	t0165	5973	1	1	0	0	0	0	copy fasta	DDX25	chr11	125899508	125933843
DDX27_chr20_49214416_49249073	1/1	t0001	273	373	78	70	165	12	46	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	t0002	267	12	12	0	0	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX27_chr20_49214416_49249073	0/0	t0003	273	1	0	0	1	0	0	copy fasta	DDX27	chr20	49214416	49249073
DDX28_chr16_68015916_68028232	1/1	t0001	695	347	89	68	124	18	46	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	t0002	695	41	0	0	41	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	t0003	695	1	0	0	1	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX28_chr16_68015916_68028232	0/0	t0004	695	1	1	0	0	0	0	copy fasta	DDX28	chr16	68015916	68028232
DDX31_chr9_132587997_132674983	0/1	t0001	1920	193	37	42	88	3	22	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0002	1919	80	20	22	21	8	9	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	1/0	t0003	1919	59	3	6	42	2	5	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0004	1919	23	15	2	5	1	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0005	1920	7	7	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0006	1920	6	6	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0007	1919	4	0	4	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0008	1919	4	0	0	4	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0009	1920	4	0	0	3	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0010	1919	3	0	0	3	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0011	1920	2	2	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0012	1920	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0013	1920	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0014	1919	2	0	0	2	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0015	1920	1	0	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0016	1919	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0017	1920	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0018	1920	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0019	1908	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0020	1919	1	0	1	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0021	1919	1	1	0	0	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0022	1919	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0023	1919	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0024	1919	1	0	0	1	0	0	copy fasta	DDX31	chr9	132587997	132674983
DDX31_chr9_132587997_132674983	0/0	t0025	1919	1	0	0	0	0	1	copy fasta	DDX31	chr9	132587997	132674983
DDX39A_chr19_14403798_14424341	1/1	t0001	215	387	89	78	158	14	46	copy fasta	DDX39A	chr19	14403798	14424341
DDX39A_chr19_14403798_14424341	0/0	t0002	215	5	5	0	0	0	0	copy fasta	DDX39A	chr19	14403798	14424341
DDX39B_chr6_31525226_31547003	0/1	t0001	395	244	46	51	103	11	32	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	t0002	395	158	39	33	67	7	12	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	t0003	394	31	1	2	26	0	2	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	t0004	395	8	6	2	0	0	0	copy fasta	DDX39B	chr6	31525226	31547003
DDX39B_chr6_31525226_31547003	0/0	t0005	395	4	0	0	4	0	0	copy fasta	DDX39B	chr6	31525226	31547003
DDX3X_chrX_41329162_41355274	0/0	t0001	2647	107	4	22	63	3	15	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	1/0	t0002	2647	86	36	14	28	3	4	copy fasta	DDX3X	chrX	41329162	41355274