Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADPRM_chr17_10692594_10716558	0/0	t0004	506	8	7	1	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0005	506	3	2	1	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0006	506	3	0	0	2	0	1	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0007	506	3	3	0	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0008	506	2	0	0	2	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0009	506	2	0	2	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0010	506	1	1	0	0	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0011	506	1	0	0	1	0	0	copy fasta	ADPRM	chr17	10692594	10716558
ADPRM_chr17_10692594_10716558	0/0	t0012	506	1	0	0	0	0	1	copy fasta	ADPRM	chr17	10692594	10716558
ADPRS_chr1_36083892_36098932	1/1	t0001	560	389	92	71	178	10	36	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	t0002	560	17	0	0	17	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	t0003	575	1	0	1	0	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	t0004	560	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	t0005	560	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADPRS_chr1_36083892_36098932	0/0	t0006	560	1	0	0	1	0	0	copy fasta	ADPRS	chr1	36083892	36098932
ADRA1A_chr8_26763809_26872278	0/0	t0001	2351	110	29	19	39	9	14	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/1	t0002	2351	62	5	24	14	5	13	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0003	2351	51	4	4	36	1	6	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	1/0	t0004	2370	30	14	2	10	0	3	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0005	2351	27	3	3	20	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0006	2370	14	3	2	9	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0007	2351	14	0	4	10	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0008	2351	9	3	3	0	1	2	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0009	2351	8	0	1	7	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0010	2351	8	0	0	8	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0011	2370	6	6	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0012	2351	6	1	5	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0013	2370	4	0	1	3	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0014	2351	4	4	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0015	2370	3	0	0	3	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0016	2370	3	3	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0017	2370	2	2	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0018	2350	2	0	2	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0019	2370	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0020	2370	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0021	2351	1	0	1	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0022	2370	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0023	2370	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0024	2370	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0025	2351	1	0	1	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0026	2351	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0027	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0028	2350	1	0	1	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0029	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0030	2351	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0031	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0032	2351	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0033	2351	1	0	0	0	0	1	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0034	2351	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0035	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278