JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX3X_chrX_41329162_41355274	0/0	t0003	2649	60	3	4	49	1	3	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0004	2648	19	16	3	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0005	2648	8	0	2	5	0	1	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0006	2647	5	5	0	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0007	2644	2	0	2	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0008	2650	2	0	0	1	0	1	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0009	2649	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0010	2645	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/1	t0011	2645	1	0	0	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0012	2649	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0013	2649	1	1	0	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0014	2642	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0015	2649	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0016	2648	1	1	0	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0017	2649	1	1	0	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0018	2652	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0019	2647	1	0	1	0	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3X_chrX_41329162_41355274	0/0	t0020	2647	1	0	0	1	0	0	copy fasta	DDX3X	chrX	41329162	41355274
DDX3Y_chrY_12899868_12925478	1/1	t0001	2426	124	18	20	70	5	9	copy fasta	DDX3Y	chrY	12899868	12925478
DDX3Y_chrY_12899868_12925478	0/0	t0002	2426	7	0	0	0	0	7	copy fasta	DDX3Y	chrY	12899868	12925478
DDX3Y_chrY_12899868_12925478	0/0	t0003	2426	1	0	0	1	0	0	copy fasta	DDX3Y	chrY	12899868	12925478
DDX3Y_chrY_12899868_12925478	0/0	t0004	2423	1	0	0	1	0	0	copy fasta	DDX3Y	chrY	12899868	12925478
DDX41_chr5_177506577_177521961	0/1	t0001	231	392	80	81	172	16	42	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	1/0	t0002	231	5	4	0	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	t0003	231	5	5	0	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	t0004	231	5	5	0	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	t0005	231	3	2	1	0	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX41_chr5_177506577_177521961	0/0	t0006	231	2	0	0	2	0	0	copy fasta	DDX41	chr5	177506577	177521961
DDX42_chr17_63769170_63824317	0/0	t0001	1140	136	39	22	61	4	10	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	1/0	t0002	1143	97	2	15	63	4	12	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/1	t0003	1128	50	23	8	4	6	8	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0004	1119	10	9	1	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0005	1128	9	0	4	5	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0006	1140	6	6	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0007	1146	4	0	0	2	2	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0008	1140	3	0	0	3	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0009	1140	2	0	2	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0010	1126	2	2	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0011	1140	2	2	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0012	1143	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0013	1126	1	1	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0014	1128	1	1	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0015	1140	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0016	1140	1	1	0	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0017	1152	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0018	1155	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0019	1140	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0020	1140	1	0	1	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0021	1140	1	0	1	0	0	0	copy fasta	DDX42	chr17	63769170	63824317
DDX42_chr17_63769170_63824317	0/0	t0022	1143	1	0	0	1	0	0	copy fasta	DDX42	chr17	63769170	63824317