JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX43_chr6_73389828_73422566	0/0	t0001	484	163	24	31	86	7	15	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	1/1	t0002	484	135	35	26	58	1	13	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	t0003	484	58	7	16	35	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	t0004	484	29	18	2	9	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	t0005	484	6	6	0	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	t0006	484	2	0	0	2	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX43_chr6_73389828_73422566	0/0	t0007	484	1	0	1	0	0	0	copy fasta	DDX43	chr6	73389828	73422566
DDX46_chr5_134753779_134836121	0/0	t0001	2588	144	17	18	91	4	14	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	1/1	t0002	2576	107	22	32	31	3	17	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0003	2592	18	8	0	8	0	2	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0004	2591	18	5	2	11	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0005	2584	9	0	0	8	0	1	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0006	2575	6	4	0	1	0	1	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0007	2596	4	4	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0008	2595	4	2	2	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0009	2592	3	2	1	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0010	2588	2	0	0	0	0	2	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0011	2576	2	0	0	2	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0012	2600	2	1	1	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0013	2601	2	2	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0014	2591	2	2	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0015	2589	2	1	1	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0016	2591	2	2	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0017	2576	2	0	0	0	1	1	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0018	2601	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0019	2609	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0020	2605	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0021	2599	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0022	2593	1	0	1	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0023	2587	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0024	2576	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0025	2576	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0026	2588	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0027	2596	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0028	2588	1	0	0	1	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0029	2592	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX46_chr5_134753779_134836121	0/0	t0030	2600	1	1	0	0	0	0	copy fasta	DDX46	chr5	134753779	134836121
DDX47_chr12_12808346_12834981	1/1	t0001	450	448	90	78	212	18	48	copy fasta	DDX47	chr12	12808346	12834981
DDX47_chr12_12808346_12834981	0/0	t0002	450	2	2	0	0	0	0	copy fasta	DDX47	chr12	12808346	12834981
DDX49_chr19_18914715_18933630	1/0	t0001	342	239	37	36	123	9	33	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/1	t0002	342	150	51	38	38	7	15	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	t0003	342	6	6	0	0	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	t0004	342	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	t0005	342	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX49_chr19_18914715_18933630	0/0	t0006	342	1	0	0	1	0	0	copy fasta	DDX49	chr19	18914715	18933630
DDX4_chr5_55733061_55822157	1/1	t0001	673	336	81	58	160	11	24	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	t0002	673	5	4	1	0	0	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	t0003	673	2	0	1	0	1	0	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	t0004	673	2	0	0	0	0	2	copy fasta	DDX4	chr5	55733061	55822157
DDX4_chr5_55733061_55822157	0/0	t0005	673	1	1	0	0	0	0	copy fasta	DDX4	chr5	55733061	55822157