JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX50_chr10_68896315_68951847	1/1	t0001	288	328	88	55	134	11	38	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	t0002	288	2	2	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	t0003	288	2	0	1	0	1	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	t0004	288	1	1	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX50_chr10_68896315_68951847	0/0	t0005	288	1	1	0	0	0	0	copy fasta	DDX50	chr10	68896315	68951847
DDX51_chr12_132131594_132149319	1/1	t0001	2702	179	15	51	78	7	26	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0002	2701	24	15	3	2	3	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0003	2698	20	2	0	16	0	2	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0004	2694	19	17	2	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0005	2702	13	3	6	3	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0006	2701	10	10	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0007	2703	8	1	4	3	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0008	2701	6	5	1	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0009	2702	5	0	3	2	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0010	2699	5	0	2	3	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0011	2700	4	0	0	3	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0012	2700	4	4	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0013	2701	3	3	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0014	2700	2	0	0	2	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0015	2703	2	0	0	2	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0016	2700	2	1	0	0	1	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0017	2701	2	2	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0018	2702	2	2	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0019	2701	2	1	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0020	2698	2	0	0	2	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0021	2694	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0022	2700	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0023	2701	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0024	2702	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0025	2702	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0026	2702	1	0	1	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0027	2702	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0028	2702	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0029	2702	1	0	0	0	1	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0030	2702	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0031	2701	1	0	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0032	2702	1	0	0	0	0	1	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0033	2702	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0034	2698	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0035	2693	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0036	2700	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0037	2699	1	0	0	1	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0038	2701	1	0	1	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0039	2700	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX51_chr12_132131594_132149319	0/0	t0040	2699	1	1	0	0	0	0	copy fasta	DDX51	chr12	132131594	132149319
DDX52_chr17_37604739_37648446	0/0	t0001	4581	79	5	5	61	0	8	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0002	4581	47	4	14	21	2	6	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0003	4583	30	0	9	11	1	9	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/1	t0004	4582	28	2	8	7	4	6	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0005	4584	22	0	9	9	2	2	copy fasta	DDX52	chr17	37604739	37648446