JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX52_chr17_37604739_37648446	0/0	t0006	4581	13	0	0	13	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0007	4575	13	13	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0008	4578	11	11	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0009	4582	10	1	1	4	1	3	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0010	4582	9	0	1	7	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0011	4583	8	0	1	7	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0012	4581	8	0	2	6	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0013	4582	7	0	2	5	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0014	4581	6	2	1	3	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0015	4579	4	4	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0016	4582	4	0	0	4	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0017	4584	4	2	0	1	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0018	4582	4	1	1	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0019	4579	3	3	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0020	4574	3	3	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0021	4583	3	0	1	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0022	4582	3	0	3	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0023	4582	3	1	0	1	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0024	4584	3	0	1	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0025	4582	3	1	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0026	4580	3	0	1	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0027	4581	2	2	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0028	4587	2	2	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0029	4586	2	2	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0030	4582	2	1	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0031	4582	2	0	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0032	4580	2	0	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0033	4583	2	0	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0034	4582	2	0	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0035	4582	2	0	0	2	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0036	4570	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0037	4583	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0038	4584	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0039	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0040	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0041	4584	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0042	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0043	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0044	4585	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0045	4582	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0046	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0047	4581	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0048	4580	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0049	4579	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0050	4578	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0051	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0052	4581	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0053	4580	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0054	4580	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0055	4582	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446