JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX52_chr17_37604739_37648446	0/0	t0056	4581	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0057	4582	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0058	4575	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0059	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0060	4584	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0061	4582	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0062	4580	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0063	4581	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0064	4583	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0065	4582	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0066	4581	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0067	4581	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0068	4581	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0069	4581	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0070	4581	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0071	4582	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0072	4585	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0073	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0074	4585	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0075	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0076	4585	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0077	4584	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0078	4582	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0079	4585	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0080	4584	1	0	0	0	1	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0081	4583	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0082	4583	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0083	4583	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0084	4584	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0085	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0086	4584	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0087	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0088	4583	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0089	4584	1	0	1	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0090	4583	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0091	4583	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0092	4583	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0093	4583	1	0	0	1	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0094	4582	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0095	4575	1	1	0	0	0	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0096	4581	1	0	0	0	1	0	copy fasta	DDX52	chr17	37604739	37648446
DDX52_chr17_37604739_37648446	0/0	t0097	4581	1	0	0	0	0	1	copy fasta	DDX52	chr17	37604739	37648446
DDX53_chrX_22994960_23008589	0/0	t0001	2110	145	21	34	82	3	5	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0002	2110	93	29	1	46	2	15	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	1/1	t0003	1735	70	0	20	33	7	8	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0004	2110	11	10	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0005	2110	5	0	0	5	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0006	2110	5	4	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0007	2110	4	4	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0008	2110	4	4	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589