JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX53_chrX_22994960_23008589	0/0	t0009	1735	3	3	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0010	2110	2	0	0	2	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0011	2110	2	2	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0012	2110	1	1	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0013	2110	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0014	2110	1	0	0	0	0	1	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0015	2110	1	1	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0016	1735	1	0	0	0	0	1	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0017	1735	1	0	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0018	2112	1	0	0	0	0	1	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0019	1546	1	0	1	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0020	2110	1	0	0	0	0	1	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0021	1735	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0022	1735	1	1	0	0	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0023	2110	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0024	2105	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX53_chrX_22994960_23008589	0/0	t0025	2110	1	0	0	1	0	0	copy fasta	DDX53	chrX	22994960	23008589
DDX54_chr12_113152173_113190478	1/1	t0001	1732	222	57	39	79	11	34	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0002	1732	29	0	0	28	0	1	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0003	1732	27	8	0	16	0	3	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0004	1732	8	8	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0005	1732	4	4	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0006	1732	3	0	0	3	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0007	1732	3	1	1	0	1	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0008	1732	2	0	0	2	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0009	1732	2	0	0	2	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0010	1732	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0011	1732	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0012	1732	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0013	1732	1	0	0	1	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0014	1732	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX54_chr12_113152173_113190478	0/0	t0015	1732	1	1	0	0	0	0	copy fasta	DDX54	chr12	113152173	113190478
DDX55_chr12_123597099_123625943	1/0	t0001	854	39	5	12	15	1	5	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0002	822	28	7	8	2	2	9	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0003	856	28	7	8	10	1	2	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/1	t0004	852	23	6	7	4	2	3	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0005	850	17	6	1	7	3	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0006	862	17	2	2	8	2	3	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0007	860	16	0	4	10	2	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0008	858	12	0	2	7	0	3	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0009	848	8	3	1	3	0	1	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0010	846	6	0	3	3	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0011	864	6	1	0	3	0	2	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0012	844	6	6	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0013	854	4	3	1	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0014	856	4	0	3	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0015	854	4	4	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0016	844	3	0	3	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0017	850	3	0	0	0	3	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0018	852	3	0	0	3	0	0	copy fasta	DDX55	chr12	123597099	123625943