JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX55_chr12_123597099_123625943	0/0	t0019	846	3	1	2	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0020	826	2	0	0	2	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0021	838	2	0	1	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0022	846	2	1	1	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0023	854	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0024	854	2	0	1	0	1	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0025	868	2	0	1	0	0	1	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0026	844	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0027	856	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0028	852	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0029	822	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0030	850	2	0	0	2	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0031	848	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0032	850	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0033	856	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0034	852	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0035	856	2	2	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0036	846	1	0	0	0	0	1	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0037	820	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0038	832	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0039	836	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0040	834	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0041	838	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0042	846	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0043	840	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0044	842	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0045	844	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0046	856	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0047	850	1	0	0	0	1	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0048	850	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0049	854	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0050	854	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0051	856	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0052	860	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0053	870	1	0	1	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0054	850	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0055	852	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0056	856	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0057	846	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0058	850	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0059	854	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0060	851	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0061	853	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0062	855	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0063	857	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0064	858	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0065	838	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0066	848	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0067	854	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0068	858	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943