JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX55_chr12_123597099_123625943	0/0	t0069	860	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0070	862	1	0	0	1	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0071	822	1	0	1	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0072	842	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0073	846	1	0	0	0	0	1	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0074	854	1	0	0	0	0	1	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0075	864	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0076	848	1	1	0	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX55_chr12_123597099_123625943	0/0	t0077	854	1	0	1	0	0	0	copy fasta	DDX55	chr12	123597099	123625943
DDX56_chr7_44560804_44578908	1/1	t0001	212	401	89	72	176	16	46	copy fasta	DDX56	chr7	44560804	44578908
DDX56_chr7_44560804_44578908	0/0	t0002	212	5	5	0	0	0	0	copy fasta	DDX56	chr7	44560804	44578908
DDX59_chr1_200639037_200674907	1/1	t0001	370	136	29	26	62	4	13	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0002	368	105	19	16	54	1	15	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0003	380	101	32	23	33	5	8	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0004	365	7	2	3	0	1	1	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0005	370	6	1	4	0	0	1	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0006	369	5	0	0	5	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0007	364	4	4	0	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0008	370	4	0	2	0	2	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0009	375	4	3	1	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0010	379	4	0	0	4	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0011	375	3	1	0	1	0	1	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0012	385	3	2	0	0	1	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0013	385	2	0	0	2	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0014	385	2	2	0	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0015	370	1	0	0	1	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0016	380	1	0	1	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0017	390	1	1	0	0	0	0	copy fasta	DDX59	chr1	200639037	200674907
DDX59_chr1_200639037_200674907	0/0	t0018	395	1	0	0	0	0	1	copy fasta	DDX59	chr1	200639037	200674907
DDX5_chr17_64493254_64511289	1/1	t0001	1840	226	14	36	127	11	36	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0002	1839	41	31	6	0	0	4	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0003	1840	25	2	8	11	2	2	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0004	1831	20	19	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0005	1835	8	7	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0006	1840	7	0	0	7	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0007	1840	5	5	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0008	1840	5	5	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0009	1840	4	0	4	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0010	1834	3	1	0	0	0	2	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0011	1835	3	3	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0012	1840	1	0	0	0	0	1	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0013	1840	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0014	1836	1	0	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0015	1840	1	0	0	0	1	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0016	1840	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0017	1840	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0018	1840	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0019	1840	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0020	1840	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0021	1840	1	0	0	0	0	1	copy fasta	DDX5	chr17	64493254	64511289