JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX5_chr17_64493254_64511289	0/0	t0022	1841	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0023	1841	1	0	0	1	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0024	1840	1	0	0	0	0	1	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0025	1840	1	0	0	0	0	1	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0026	1840	1	0	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0027	1839	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0028	1839	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0029	1840	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0030	1840	1	0	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0031	1841	1	0	1	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0032	1840	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0033	1839	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX5_chr17_64493254_64511289	0/0	t0034	1840	1	1	0	0	0	0	copy fasta	DDX5	chr17	64493254	64511289
DDX60L_chr4_168351735_168485492	0/1	t0001	1639	129	39	26	39	7	17	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	1/0	t0002	1639	82	38	16	14	2	11	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0003	1639	36	2	14	10	5	5	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0004	1639	7	3	2	0	2	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0005	1639	3	3	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0006	1639	2	1	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0007	1639	2	0	2	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0008	1639	2	0	0	2	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0009	1639	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0010	1639	1	1	0	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0011	1639	1	0	1	0	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0012	1639	1	0	0	0	0	1	copy fasta	DDX60L	chr4	168351735	168485492
DDX60L_chr4_168351735_168485492	0/0	t0013	1639	1	0	0	1	0	0	copy fasta	DDX60L	chr4	168351735	168485492
DDX60_chr4_168211294_168323752	1/1	t0001	877	266	85	56	80	11	32	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	t0002	877	1	0	0	0	0	1	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	t0003	877	1	0	0	0	1	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	t0004	877	1	1	0	0	0	0	copy fasta	DDX60	chr4	168211294	168323752
DDX60_chr4_168211294_168323752	0/0	t0005	877	1	0	0	0	0	1	copy fasta	DDX60	chr4	168211294	168323752
DDX6_chr11_118742763_118796164	0/0	t0001	4674	78	17	19	35	2	5	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0002	4678	25	0	5	13	0	7	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0003	4681	17	8	5	4	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0004	4682	14	1	5	3	4	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0005	4680	14	0	1	13	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0006	4668	12	0	0	9	0	3	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0007	4680	11	5	3	0	1	2	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0008	4683	11	1	1	2	0	7	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0009	4675	9	3	0	3	2	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0010	4684	6	0	0	3	0	3	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0011	4679	6	0	0	6	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0012	4681	6	0	0	6	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0013	4667	6	0	0	6	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0014	4679	5	0	3	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0015	4673	5	0	1	4	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0016	4676	5	1	0	4	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0017	4677	4	4	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0018	4681	4	4	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0019	4676	4	4	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164