JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX6_chr11_118742763_118796164	0/0	t0020	4674	4	1	1	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0021	4676	3	2	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0022	4676	3	3	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0023	4681	3	2	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0024	4677	3	0	1	1	1	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0025	4679	3	0	1	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0026	4675	3	0	2	0	1	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0027	4681	3	1	2	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0028	4677	3	2	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0029	4666	3	0	0	2	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0030	4678	2	2	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0031	4678	2	2	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0032	4678	2	0	1	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0033	4679	2	0	0	0	0	2	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0034	4679	2	1	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0035	4682	2	1	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/1	t0036	4683	2	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0037	4680	2	0	2	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0038	4681	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0039	4679	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0040	4673	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0041	4680	2	0	1	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0042	4680	2	0	2	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0043	4682	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0044	4683	2	0	1	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0045	4684	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0046	4685	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0047	4677	2	0	0	2	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0048	4677	2	0	0	0	0	2	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0049	4678	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	1/0	t0050	4677	1	0	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0051	4680	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0052	4677	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0053	4679	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0054	4679	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0055	4681	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0056	4682	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0057	4682	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0058	4677	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0059	4682	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0060	4680	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0061	4682	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0062	4682	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0063	4674	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0064	4681	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0065	4678	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0066	4676	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0067	4677	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0068	4680	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0069	4678	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164