Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADRA1A_chr8_26763809_26872278	0/0	t0036	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0037	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0038	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0039	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0040	2351	1	0	1	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0041	2351	1	0	0	1	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0042	2370	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1A_chr8_26763809_26872278	0/0	t0043	2351	1	1	0	0	0	0	copy fasta	ADRA1A	chr8	26763809	26872278
ADRA1B_chr5_159911482_159978012	1/1	t0001	945	315	83	60	122	11	37	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0002	945	41	1	8	30	1	1	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0003	944	6	0	1	5	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0004	945	3	3	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0005	944	3	0	0	3	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0006	944	3	0	1	2	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0007	945	2	0	0	2	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0008	945	2	0	0	2	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0009	945	1	0	0	0	0	1	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0010	945	1	0	0	1	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0011	945	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0012	945	1	0	0	0	0	1	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0013	945	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0014	945	1	0	0	1	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0015	945	1	1	0	0	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0016	945	1	0	0	1	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1B_chr5_159911482_159978012	0/0	t0017	945	1	0	0	1	0	0	copy fasta	ADRA1B	chr5	159911482	159978012
ADRA1D_chr20_4215630_4254287	0/1	t0001	1224	213	22	27	153	4	6	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0002	1224	67	8	16	25	4	14	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	1/0	t0003	1224	42	7	19	7	2	6	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0004	1224	37	14	6	7	5	5	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0005	1224	33	8	4	8	3	10	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0006	1224	16	13	2	0	0	1	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0007	1224	11	11	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0008	1224	9	0	0	9	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0009	1224	8	8	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0010	1224	5	0	0	5	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0011	1224	3	3	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0012	1224	2	2	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0013	1224	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0014	1224	1	1	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0015	1224	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0016	1224	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0017	1224	1	1	0	0	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA1D_chr20_4215630_4254287	0/0	t0018	1224	1	0	0	1	0	0	copy fasta	ADRA1D	chr20	4215630	4254287
ADRA2A_chr10_111072029_111085907	0/1	t0001	2482	158	41	43	50	7	16	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0002	2482	82	13	7	57	0	5	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0003	2482	78	12	3	52	1	10	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0004	2482	28	10	6	6	1	5	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0005	2482	25	2	3	18	0	2	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0006	2482	10	6	2	0	0	2	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0007	2482	10	0	0	10	0	0	copy fasta	ADRA2A	chr10	111072029	111085907