JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DDX6_chr11_118742763_118796164	0/0	t0070	4679	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0071	4678	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0072	4674	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0073	4675	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0074	4678	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0075	4673	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0076	4672	1	0	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0077	4674	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0078	4674	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0079	4675	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0080	4682	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0081	4672	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0082	4682	1	0	0	0	1	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0083	4680	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0084	4683	1	0	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0085	4679	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0086	4681	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0087	4682	1	0	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0088	4681	1	0	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0089	4683	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0090	4677	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0091	4679	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0092	4680	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0093	4678	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0094	4676	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0095	4680	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0096	4679	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0097	4684	1	0	1	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0098	4681	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0099	4681	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0100	4674	1	0	0	0	0	1	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0101	4696	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0102	4676	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0103	4676	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0104	4667	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0105	4666	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0106	4678	1	0	0	1	0	0	copy fasta	DDX6	chr11	118742763	118796164
DDX6_chr11_118742763_118796164	0/0	t0107	4681	1	1	0	0	0	0	copy fasta	DDX6	chr11	118742763	118796164
DEAF1_chr11_639233_700222	1/0	t0001	493	336	87	66	133	8	41	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	t0002	493	3	0	0	3	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	t0003	493	2	0	1	0	0	1	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	t0004	493	2	2	0	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	t0005	493	1	0	1	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DEAF1_chr11_639233_700222	0/0	t0006	493	1	1	0	0	0	0	copy fasta	DEAF1	chr11	639233	700222
DECR1_chr8_89996477_90058633	0/0	t0001	1753	163	36	29	77	3	18	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	1/1	t0002	1753	116	13	21	53	6	21	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0003	1752	43	0	6	33	1	3	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0004	1754	29	25	2	2	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0005	1752	6	3	0	3	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0006	1753	5	4	1	0	0	0	copy fasta	DECR1	chr8	89996477	90058633