JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DECR1_chr8_89996477_90058633	0/0	t0007	1754	3	1	1	1	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0008	1753	3	0	1	0	2	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0009	1754	2	2	0	0	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0010	1753	1	0	0	0	1	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0011	1753	1	1	0	0	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0012	1753	1	0	1	0	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0013	1753	1	0	0	0	1	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0014	1753	1	0	0	1	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0015	1753	1	1	0	0	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0016	1753	1	0	1	0	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR1_chr8_89996477_90058633	0/0	t0017	1752	1	0	1	0	0	0	copy fasta	DECR1	chr8	89996477	90058633
DECR2_chr16_396885_417482	0/1	t0001	673	330	60	72	143	14	40	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0002	673	17	16	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0003	673	7	0	0	7	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0004	673	4	4	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0005	647	3	3	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0006	669	3	2	1	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0007	673	2	2	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DECR2_chr16_396885_417482	0/0	t0008	673	1	1	0	0	0	0	copy fasta	DECR2	chr16	396885	417482
DEDD2_chr19_42193598_42222677	1/1	t0001	925	237	68	46	70	12	39	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0002	925	7	7	0	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0003	925	3	2	1	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0004	925	1	1	0	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0005	925	1	0	0	0	0	1	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0006	925	1	0	0	1	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0007	925	1	0	0	1	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD2_chr19_42193598_42222677	0/0	t0008	925	1	0	1	0	0	0	copy fasta	DEDD2	chr19	42193598	42222677
DEDD_chr1_161115974_161137667	1/0	t0001	1388	172	43	33	70	8	17	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/1	t0002	1389	159	23	24	94	8	9	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	t0003	1388	4	0	0	4	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	t0004	1388	1	0	1	0	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	t0005	1388	1	1	0	0	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEDD_chr1_161115974_161137667	0/0	t0006	1388	1	1	0	0	0	0	copy fasta	DEDD	chr1	161115974	161137667
DEF6_chr6_35292818_35326771	0/0	t0001	401	291	73	42	136	7	33	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	1/1	t0002	401	32	10	11	6	2	1	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	t0003	401	1	0	0	0	1	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	t0004	384	1	0	1	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF6_chr6_35292818_35326771	0/0	t0005	401	1	1	0	0	0	0	copy fasta	DEF6	chr6	35292818	35326771
DEF8_chr16_89943755_89973060	0/1	t0001	2265	270	52	55	119	12	31	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0002	2265	30	0	1	29	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0003	2265	14	0	6	0	0	8	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	1/0	t0004	2265	10	1	4	0	4	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0005	2265	10	2	1	0	0	7	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0006	2265	8	8	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0007	2265	7	6	1	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0008	2265	6	5	1	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0009	2265	5	5	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0010	2265	4	4	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0011	2265	4	3	0	0	1	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0012	2265	3	3	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060