JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEF8_chr16_89943755_89973060	0/0	t0013	2265	3	0	2	0	1	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0014	2265	2	2	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0015	2265	2	0	2	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0016	2265	2	0	0	2	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0017	2265	2	2	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0018	2265	1	0	0	0	0	1	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0019	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0020	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0021	2265	1	0	0	0	0	1	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0022	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0023	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0024	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0025	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0026	2265	1	1	0	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEF8_chr16_89943755_89973060	0/0	t0027	2265	1	0	1	0	0	0	copy fasta	DEF8	chr16	89943755	89973060
DEFA1B_chr8_6991766_7004198	0/0	t0000	0	7	3	1	2	1	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0001	210	342	79	52	157	13	41	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0002	210	26	8	10	3	1	4	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0003	210	16	3	5	6	1	1	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0004	210	3	0	1	2	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0005	134	2	2	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0006	210	1	1	0	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1B_chr8_6991766_7004198	0/0	t0007	210	1	0	1	0	0	0	copy fasta	DEFA1B	chr8	6991766	7004198
DEFA1_chr8_6972649_6985092	0/0	t0001	214	195	15	37	113	8	22	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	t0002	214	114	35	17	44	6	12	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	t0003	214	74	14	18	32	4	6	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	t0004	214	24	24	0	0	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA1_chr8_6972649_6985092	0/0	t0005	214	1	0	0	1	0	0	copy fasta	DEFA1	chr8	6972649	6985092
DEFA3_chr8_7010869_7023297	0/0	t0001	210	260	49	43	126	10	32	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	t0002	210	146	14	39	73	8	12	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	t0003	210	18	18	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	t0004	210	2	0	0	0	0	2	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	t0005	210	2	2	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	t0006	210	1	1	0	0	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA3_chr8_7010869_7023297	0/0	t0007	210	1	0	0	1	0	0	copy fasta	DEFA3	chr8	7010869	7023297
DEFA4_chr8_6930820_6943306	0/0	t0000	0	1	0	0	0	1	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/1	t0001	294	285	55	41	145	8	35	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	1/0	t0002	294	172	27	32	93	6	13	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	t0003	294	19	17	2	0	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	t0004	294	7	0	6	0	1	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	t0005	294	1	0	1	0	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA4_chr8_6930820_6943306	0/0	t0006	294	1	1	0	0	0	0	copy fasta	DEFA4	chr8	6930820	6943306
DEFA5_chr8_7050304_7061739	1/1	t0001	170	446	83	73	232	12	44	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	t0002	170	12	12	0	0	0	0	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	t0003	170	11	0	3	0	5	3	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	t0004	170	2	0	0	0	1	1	copy fasta	DEFA5	chr8	7050304	7061739
DEFA5_chr8_7050304_7061739	0/0	t0005	170	1	1	0	0	0	0	copy fasta	DEFA5	chr8	7050304	7061739
DEFA6_chr8_6919697_6931076	1/1	t0001	163	439	91	77	212	14	43	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	t0002	163	28	3	5	13	2	5	copy fasta	DEFA6	chr8	6919697	6931076
DEFA6_chr8_6919697_6931076	0/0	t0003	163	4	4	0	0	0	0	copy fasta	DEFA6	chr8	6919697	6931076