JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEFA6_chr8_6919697_6931076	0/0	t0004	163	1	0	0	1	0	0	copy fasta	DEFA6	chr8	6919697	6931076
DEFB103A_chr8_7876392_7887663	0/0	t0001	126	170	28	28	90	8	16	copy fasta	DEFB103A	chr8	7876392	7887663
DEFB103B_chr8_7423888_7435348	0/0	t0001	315	143	22	29	78	3	11	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	t0002	315	29	2	4	15	1	7	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	t0003	315	2	1	1	0	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	t0004	315	1	0	0	1	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB103B_chr8_7423888_7435348	0/0	t0005	315	1	1	0	0	0	0	copy fasta	DEFB103B	chr8	7423888	7435348
DEFB104A_chr8_7831436_7846242	0/0	t0001	98	147	27	36	64	4	16	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104A_chr8_7831436_7846242	0/0	t0002	98	1	1	0	0	0	0	copy fasta	DEFB104A	chr8	7831436	7846242
DEFB104B_chr8_7465308_7480082	0/0	t0001	63	196	30	34	96	10	26	copy fasta	DEFB104B	chr8	7465308	7480082
DEFB105A_chr8_7816004_7828880	0/0	t0001	1045	60	5	11	38	2	4	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0002	1047	29	4	6	14	3	2	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0003	1047	8	1	2	4	1	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0004	1046	7	0	1	6	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0005	1047	6	3	1	1	0	1	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0006	1047	5	0	3	0	0	2	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0007	1045	4	0	0	4	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0008	1045	4	1	0	3	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0009	1047	3	0	3	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0010	1047	3	0	0	3	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0011	1046	2	2	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0012	1045	2	2	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0013	1047	2	2	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0014	1047	1	0	1	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0015	1046	1	0	0	1	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0016	1046	1	0	0	1	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0017	1047	1	0	0	1	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0018	1047	1	1	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0019	1047	1	1	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0020	1045	1	1	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0021	1046	1	1	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0022	1047	1	0	0	0	0	1	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0023	1047	1	1	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105A_chr8_7816004_7828880	0/0	t0024	1047	1	1	0	0	0	0	copy fasta	DEFB105A	chr8	7816004	7828880
DEFB105B_chr8_7482679_7494593	0/0	t0001	85	98	21	12	52	0	13	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB105B_chr8_7482679_7494593	0/0	t0002	85	38	13	4	18	0	3	copy fasta	DEFB105B	chr8	7482679	7494593
DEFB106A_chr8_7820139_7834053	0/0	t0001	139	160	42	32	60	12	14	copy fasta	DEFB106A	chr8	7820139	7834053
DEFB106B_chr8_7477504_7491400	0/0	t0001	119	180	32	26	88	6	28	copy fasta	DEFB106B	chr8	7477504	7491400
DEFB107A_chr8_7806720_7820716	0/0	t0001	177	124	31	12	69	5	7	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107A_chr8_7806720_7820716	0/0	t0002	177	43	6	16	15	3	3	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107A_chr8_7806720_7820716	0/0	t0003	177	2	0	0	2	0	0	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107A_chr8_7806720_7820716	0/0	t0004	177	1	1	0	0	0	0	copy fasta	DEFB107A	chr8	7806720	7820716
DEFB107B_chr8_7490911_7514311	0/0	t0001	112	8	8	0	0	0	0	copy fasta	DEFB107B	chr8	7490911	7514311
DEFB108B_chr11_71828200_71842710	1/1	t0001	149	408	64	76	216	10	40	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB108B_chr11_71828200_71842710	0/0	t0002	149	32	32	0	0	0	0	copy fasta	DEFB108B	chr11	71828200	71842710
DEFB109B_chr8_7307722_7325096	0/1	t0001	270	358	41	70	191	16	39	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0002	270	8	8	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0003	270	2	0	0	2	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0004	270	2	0	1	0	0	1	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0005	270	1	1	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096