JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEFB109B_chr8_7307722_7325096	0/0	t0006	270	1	0	0	0	0	1	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0007	270	1	0	0	1	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0008	270	1	1	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0009	270	1	0	1	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0010	270	1	0	0	0	0	1	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB109B_chr8_7307722_7325096	0/0	t0011	270	1	1	0	0	0	0	copy fasta	DEFB109B	chr8	7307722	7325096
DEFB110_chr6_50013843_50026994	1/1	t0001	194	353	83	62	159	17	30	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	t0002	194	23	1	6	13	1	2	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	t0003	194	5	5	0	0	0	0	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	t0004	194	4	0	0	0	0	4	copy fasta	DEFB110	chr6	50013843	50026994
DEFB110_chr6_50013843_50026994	0/0	t0005	194	1	1	0	0	0	0	copy fasta	DEFB110	chr6	50013843	50026994
DEFB112_chr6_50037099_50054929	1/1	t0001	1537	274	49	59	118	13	33	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0002	1537	16	11	1	2	1	1	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0003	1537	10	9	1	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0004	1537	6	6	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0005	1538	5	5	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0006	1537	4	3	1	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0007	1537	4	0	1	0	0	3	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0008	1537	3	3	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0009	1537	2	0	2	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0010	1537	2	0	0	2	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0011	1537	1	1	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0012	1537	1	0	1	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0013	1537	1	0	0	0	0	1	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0014	1537	1	0	0	1	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0015	1537	1	0	0	1	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB112_chr6_50037099_50054929	0/0	t0016	1537	1	1	0	0	0	0	copy fasta	DEFB112	chr6	50037099	50054929
DEFB114_chr6_49955249_49969164	1/1	t0001	103	399	93	70	182	18	34	copy fasta	DEFB114	chr6	49955249	49969164
DEFB114_chr6_49955249_49969164	0/0	t0002	103	1	1	0	0	0	0	copy fasta	DEFB114	chr6	49955249	49969164
DEFB118_chr20_31363601_31378923	1/1	t0001	804	272	48	64	113	16	29	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	t0002	803	56	29	4	22	0	1	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	t0003	805	40	10	10	10	2	8	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	t0004	803	6	6	0	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	t0005	805	2	0	0	2	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	t0006	804	1	0	0	1	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB118_chr20_31363601_31378923	0/0	t0007	805	1	1	0	0	0	0	copy fasta	DEFB118	chr20	31363601	31378923
DEFB119_chr20_31372164_31395590	0/0	t0001	190	191	9	48	98	10	26	copy fasta	DEFB119	chr20	31372164	31395590
DEFB119_chr20_31372164_31395590	1/1	t0002	190	172	78	30	42	6	14	copy fasta	DEFB119	chr20	31372164	31395590
DEFB119_chr20_31372164_31395590	0/0	t0003	190	4	4	0	0	0	0	copy fasta	DEFB119	chr20	31372164	31395590
DEFB119_chr20_31372164_31395590	0/0	t0004	190	2	1	1	0	0	0	copy fasta	DEFB119	chr20	31372164	31395590
DEFB119_chr20_31372164_31395590	0/0	t0005	190	1	0	1	0	0	0	copy fasta	DEFB119	chr20	31372164	31395590
DEFB121_chr20_31399845_31411215	1/1	t0001	132	370	91	80	142	15	40	copy fasta	DEFB121	chr20	31399845	31411215
DEFB121_chr20_31399845_31411215	0/0	t0002	132	1	1	0	0	0	0	copy fasta	DEFB121	chr20	31399845	31411215
DEFB121_chr20_31399845_31411215	0/0	t0003	132	1	0	0	0	1	0	copy fasta	DEFB121	chr20	31399845	31411215
DEFB123_chr20_31435632_31455257	1/0	t0001	151	358	88	73	153	12	31	copy fasta	DEFB123	chr20	31435632	31455257
DEFB123_chr20_31435632_31455257	0/1	t0002	151	13	1	5	1	2	3	copy fasta	DEFB123	chr20	31435632	31455257
DEFB123_chr20_31435632_31455257	0/0	t0003	151	1	1	0	0	0	0	copy fasta	DEFB123	chr20	31435632	31455257
DEFB124_chr20_31460471_31480127	1/0	t0001	562	198	14	49	93	11	30	copy fasta	DEFB124	chr20	31460471	31480127
DEFB124_chr20_31460471_31480127	0/1	t0002	562	162	78	27	37	5	14	copy fasta	DEFB124	chr20	31460471	31480127
DEFB124_chr20_31460471_31480127	0/0	t0003	562	2	0	0	2	0	0	copy fasta	DEFB124	chr20	31460471	31480127